RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 HMGN3Q15651 99 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 CNPY1Q3B7I2 92 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 CDNFQ49AH0 187 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 DCAF12L2Q5VW00 463 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 HACD4Q5VWC8 232 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 DMRTA1Q5VZB9 504 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 CLEC9AQ6UXN8 241 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 PPP1R35Q8TAP8 253 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 UBALD1Q8TB05 177 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 MRGPRDQ8TDS7 321 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 CCDC107Q8WV48 283 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 NUDCD2Q8WVJ2 157 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 NEDD4LQ96PU5 975 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 ABHD1Q96SE0 405 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 Q9N2K0 584 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 PLEKHJ1Q9NW61 149 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 TMEM160Q9NX00 188 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 ANAPC10Q9UM13 185 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 UBE2J1Q9Y385 318 aaPredicted RBP7.59□□□□□ -1.19
VPS35-211ENST00000569950 A3GALT2U3KPV4 340 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 V9GYH0 126 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 C2CD3Q4AC94 2353 aa7.59□□□□□ -1.2
VPS35-211ENST00000569950 A0A087X0M5 115 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 A0A0G2JMP0 313 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 CENPVL3A0A0U1RRI6 287 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 A0A0X1KG70 313 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 KBTBD11-OT1A0A1B0GTJ5 212 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 A0A1B0GX30 115 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 hADV38S2A0JD32 116 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 METTL21EPA6NDL7 271 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 SERPINE3A8MV23 424 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 A8MV72 311 aaPredicted RBP7.58□□□□□ -1.2
VPS35-211ENST00000569950 F2RL2O00254 374 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 RBP4P02753 201 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 FCGR3AP08637 254 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 GSTP1P09211 210 aaKnown RBP7.58□□□□□ -1.2
VPS35-211ENST00000569950 IGHV1-8P0DP01 117 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 OMGP23515 440 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 PRTN3P24158 256 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 TNFSF8P32971 234 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 KLRD1Q13241 179 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 MADCAM1Q13477 382 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 RBM39Q14498 530 aaKnown RBP7.58□□□□□ -1.2
VPS35-211ENST00000569950 FAM120AOSQ5T036 256 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 PRAMEF5Q5TYX0 476 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 FAHD2BQ6P2I3 314 aaPredicted RBP7.58□□□□□ -1.2
VPS35-211ENST00000569950 CNIH2Q6PI25 160 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 HEPN1Q6WQI6 88 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 Q6ZS49 121 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 IL17RELQ6ZVW7 336 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 VMO1Q7Z5L0 202 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 CCDC190Q86UF4 302 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 OR4M2Q8NGB6 313 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 OR1L1Q8NH94 360 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 MCFD2Q8NI22 146 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 NEK7Q8TDX7 302 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 FAHD2AQ96GK7 314 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 KIRREL1Q96J84 757 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 ZNF714Q96N38 554 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 C7orf69Q9H7B7 122 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 BATF3Q9NR55 127 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 SIRT7Q9NRC8 400 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 YAE1D1Q9NRH1 226 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 TAS2R3Q9NYW6 316 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 CALYQ9NYX4 217 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 ONECUT1Q9UBC0 465 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 LPAR3Q9UBY5 353 aa7.58□□□□□ -1.2
VPS35-211ENST00000569950 ZNF230Q9UIE0 474 aaPredicted RBP7.58□□□□□ -1.2
VPS35-211ENST00000569950 TRGV10A0A0A0MS01 117 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 A0A1W2PQ09 198 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 ZNF729A6NN14 1252 aaPredicted RBP7.57□□□□□ -1.2
VPS35-211ENST00000569950 ODF3BA8MYP8 253 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 INAFM1C9JVW0 142 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 ORC5O43913 435 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 NOL3O60936 208 aaKnown RBP7.57□□□□□ -1.2
VPS35-211ENST00000569950 CLPXO76031 633 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 SOX6P35712 828 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 GLP1RP43220 463 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 RANBP1P43487 201 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 ZNF79Q15937 498 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 ZNF782Q6ZMW2 699 aaPredicted RBP7.57□□□□□ -1.2
VPS35-211ENST00000569950 LDLRAD3Q86YD5 345 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 PNKDQ8N490 385 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 GVQW1Q8N7I0 195 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 ZNF439Q8NDP4 499 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 OR6Q1Q8NGQ2 317 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 RFESDQ8TAC1 157 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 GPX8Q8TED1 209 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 MAFIPQ8WZ33 124 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 AP3S1Q92572 193 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 SNAPC3Q92966 411 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 S100A16Q96FQ6 103 aaKnown RBP7.57□□□□□ -1.2
VPS35-211ENST00000569950 CMSS1Q9BQ75 279 aaKnown RBP7.57□□□□□ -1.2
VPS35-211ENST00000569950 PARP12Q9H0J9 701 aaKnown RBP7.57□□□□□ -1.2
VPS35-211ENST00000569950 MMP27Q9H306 513 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 METTL8Q9H825 291 aaKnown RBP7.57□□□□□ -1.2
VPS35-211ENST00000569950 TAF9BQ9HBM6 251 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 ZNF286AQ9HBT8 521 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 C12orf4Q9NQ89 552 aa7.57□□□□□ -1.2
VPS35-211ENST00000569950 OR6C3Q9NZP0 311 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms