RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 RSPO3Q9BXY4 272 aaPredicted RBP2.7□□□□□ -1.98
LINC00560-201ENST00000564593 ARMC1Q9NVT9 282 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 RHBDL2Q9NX52 303 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 KIAA1671Q9BY89 1806 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 VWA8A3KMH1 1905 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 PLXNA4Q9HCM2 1894 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 HELZP42694 1942 aaKnown RBP2.7□□□□□ -1.98
LINC00560-201ENST00000564593 IGKV1-27A0A075B6S5 117 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 TRAV40A0A0B4J280 105 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 IGHV7-4-1A0A0J9YVY3 117 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 A0A1W2PQ67 120 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 MYBPHLA2RUH7 354 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 A8MT66 165 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 IQCF5A8MTL0 148 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 H3BN98 237 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 APOA1P02647 267 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 IL4P05112 153 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 HLA-DQB2P05538 268 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 GPR4P46093 362 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 SERPINB10P48595 397 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 STC1P52823 247 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 AQP4P55087 323 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 TAS2R39P59534 338 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 OR2B8PP59922 312 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 AP1S1P61966 158 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 SIGLEC14Q08ET2 396 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 ZNF816Q0VGE8 651 aaPredicted RBP2.7□□□□□ -1.98
LINC00560-201ENST00000564593 TAF1AQ15573 450 aaPredicted RBP2.7□□□□□ -1.98
LINC00560-201ENST00000564593 CDKL4Q5MAI5 379 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 CLEC6AQ6EIG7 209 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 LCN8Q6JVE9 175 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 SLC25A25Q6KCM7 469 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 TTC33Q6PID6 262 aaPredicted RBP2.7□□□□□ -1.98
LINC00560-201ENST00000564593 GLT6D1Q7Z4J2 308 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 ZNF615Q8N8J6 731 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 OR13G1Q8NGZ3 307 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 GHSRQ92847 366 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 CENPNQ96H22 339 aaPredicted RBP2.7□□□□□ -1.98
LINC00560-201ENST00000564593 PPP3R2Q96LZ3 170 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 CNBD2Q96M20 576 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 OR52B2Q96RD2 323 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 TEAD3Q99594 435 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 CDX2Q99626 313 aaPredicted RBP2.7□□□□□ -1.98
LINC00560-201ENST00000564593 UGT2B28Q9BY64 529 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 DERL2Q9GZP9 239 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 ZNF442Q9H7R0 627 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 REEP1Q9H902 201 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 CCDC167Q9P0B6 97 aa2.7□□□□□ -1.98
LINC00560-201ENST00000564593 RSL24D1Q9UHA3 163 aaKnown RBP2.7□□□□□ -1.98
LINC00560-201ENST00000564593 DENND4CQ5VZ89 1909 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 CENPVL3A0A0U1RRI6 287 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 LOC285095A0A1B0GVY8 99 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 TCRBV3S1A0A5B6 114 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 FAM92AA1XBS5 289 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 ZNF850A8MQ14 1090 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 KDELR3O43731 214 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 RBBP9O75884 186 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 RCBTB2O95199 551 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 ZNF7P17097 686 aaPredicted RBP2.69□□□□□ -1.98
LINC00560-201ENST00000564593 TUFMP49411 452 aaKnown RBP2.69□□□□□ -1.98
LINC00560-201ENST00000564593 CTAG1AP78358 180 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 IFITM3Q01628 133 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 YIF1BQ5BJH7 314 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 ZNF678Q5SXM1 525 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 LPCAT4Q643R3 524 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 OPN5Q6U736 354 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 UGT2A3Q6UWM9 527 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 CD300LGQ6UXG3 332 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 TMPRSS11AQ6ZMR5 421 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 LINC00299Q6ZSB3 139 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 LINC00336Q6ZUF6 198 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 FAM58AQ8N1B3 248 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 ZNF645Q8N7E2 425 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 ASCC1Q8N9N2 400 aaKnown RBP2.69□□□□□ -1.98
LINC00560-201ENST00000564593 ZNF555Q8NEP9 628 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 OR8J3Q8NGG0 315 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 CLHC1Q8NHS4 586 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 NDNFQ8TB73 568 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 TWIST2Q8WVJ9 160 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 ARL5BQ96KC2 179 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 GLT1D1Q96MS3 346 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 CCDC115Q96NT0 180 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 PKMYT1Q99640 499 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 TMEM175Q9BSA9 504 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 C1orf50Q9BV19 199 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 C20orf27Q9GZN8 174 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 ING2Q9H160 280 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 WDR55Q9H6Y2 383 aaPredicted RBP2.69□□□□□ -1.98
LINC00560-201ENST00000564593 TREM1Q9NP99 234 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 FBXO8Q9NRD0 319 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 NLE1Q9NVX2 485 aaPredicted RBP2.69□□□□□ -1.98
LINC00560-201ENST00000564593 C3orf18Q9UK00 162 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 OBSL1O75147 1896 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 ANAPC1Q9H1A4 1944 aa2.69□□□□□ -1.98
LINC00560-201ENST00000564593 IGLV2-18A0A075B6J9 118 aa2.68□□□□□ -1.98
LINC00560-201ENST00000564593 IGHV3-72A0A0B4J1Y9 119 aa2.68□□□□□ -1.98
LINC00560-201ENST00000564593 CENPXA8MT69 81 aa2.68□□□□□ -1.98
LINC00560-201ENST00000564593 PRMT5O14744 637 aaPredicted RBP2.68□□□□□ -1.98
LINC00560-201ENST00000564593 MRPS14O60783 128 aaKnown RBP2.68□□□□□ -1.98
LINC00560-201ENST00000564593 PFDN1O60925 122 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms