RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CDK5R1Q15078 307 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 ECSCRQ19T08 205 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 RNLSQ5VYX0 342 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 UTS2BQ765I0 119 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 SSX6Q7RTT6 188 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 BCDIN3DQ7Z5W3 292 aaKnown RBP5.62□□□□□ -1.51
VPS4A-203ENST00000564399 GTSCR1Q86UQ5 136 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 DEFB107AQ8IZN7 70 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 TMEM104Q8NE00 496 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 UBALD1Q8TB05 177 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 PLPPR1Q8TBJ4 325 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 CASTOR1Q8WTX7 329 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 SPSB1Q96BD6 273 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 FGGYQ96C11 551 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 MBOAT4Q96T53 435 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 HIPK2Q9H2X6 1198 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 RHOFQ9HBH0 211 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 ADGRL4Q9HBW9 690 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 SLC25A19Q9HC21 320 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 ERGIC3Q9Y282 383 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 MYRFQ9Y2G1 1151 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 IGHV3-43A0A0B4J1X8 118 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 TRAV24A0A0B4J272 114 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 A0A1W2PN81 502 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 TCRBV5S2A0A599 114 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 METTL15A6NJ78 407 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 H0Y980 276 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 SDCBPO00560 298 aaPredicted RBP5.61□□□□□ -1.51
VPS4A-203ENST00000564399 TXNL1O43396 289 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 PRKYO43930 277 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 APOL3O95236 402 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 HSPB1P04792 205 aaKnown RBP5.61□□□□□ -1.51
VPS4A-203ENST00000564399 UBCP0CG48 685 aaKnown RBP5.61□□□□□ -1.51
VPS4A-203ENST00000564399 IGHV3-43DP0DP04 118 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 DBTP11182 482 aaKnown RBP5.61□□□□□ -1.51
VPS4A-203ENST00000564399 FSTP19883 344 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 GZMHP20718 246 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 PRKACGP22612 351 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 BLVRBP30043 206 aaPredicted RBP5.61□□□□□ -1.51
VPS4A-203ENST00000564399 CHRNA7P36544 502 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 MNAT1P51948 309 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 SPATS1Q496A3 300 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 RSBN1Q5VWQ0 802 aaPredicted RBP5.61□□□□□ -1.51
VPS4A-203ENST00000564399 FAHD1Q6P587 224 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 TMEM179BQ7Z7N9 219 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 DHFR2Q86XF0 187 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 SAXO1Q8IYX7 474 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 PRSS35Q8N3Z0 413 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 LINC00311Q8N616 119 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 MINDY2Q8NBR6 621 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 OR13C9Q8NGT0 318 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 CNIH3Q8TBE1 160 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 ABHD5Q8WTS1 349 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 ARL11Q969Q4 196 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 UTP4Q969X6 686 aaKnown RBP5.61□□□□□ -1.51
VPS4A-203ENST00000564399 ZNF251Q9BRH9 671 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 ST6GALNAC5Q9BVH7 336 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 ANKRD60Q9BZ19 345 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 TPSG1Q9NRR2 321 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 CEPT1Q9Y6K0 416 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 A3GALT2U3KPV4 340 aa5.61□□□□□ -1.51
VPS4A-203ENST00000564399 IGHV7-81A0A0B4J1V7 117 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 A0A1W2PQL4 384 aaPredicted RBP5.6□□□□□ -1.51
VPS4A-203ENST00000564399 CXorf65A6NEN9 183 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 M0R129 80 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 ARPC1BO15143 372 aaKnown RBP5.6□□□□□ -1.51
VPS4A-203ENST00000564399 SULT1C4O75897 302 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 BRI3O95415 125 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 HLA-DRB1P01911 266 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 CSTBP04080 98 aaKnown RBP5.6□□□□□ -1.51
VPS4A-203ENST00000564399 RAP2AP10114 183 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 ANXA8P13928 327 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 KCNJ3P48549 501 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 CRISP1P54107 249 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 ACTBP60709 375 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 ZSCAN26Q16670 478 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 TMEM244Q5VVB8 128 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 LIN54Q6MZP7 749 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 FAM220AQ7Z4H9 259 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 HS3ST5Q8IZT8 346 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 TCEANCQ8N8B7 351 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 OR10H4Q8NGA5 316 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 OR52M1Q8NGK5 317 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 CCDC107Q8WV48 283 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 MS4A10Q96PG2 267 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 ELAC2Q9BQ52 826 aaKnown RBP5.6□□□□□ -1.51
VPS4A-203ENST00000564399 PRRG3Q9BZD7 231 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 GFOD1Q9NXC2 390 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 NDE1Q9NXR1 346 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 GNG8Q9UK08 70 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 FOXA2Q9Y261 457 aaPredicted RBP5.6□□□□□ -1.51
VPS4A-203ENST00000564399 ALMS1Q8TCU4 4167 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 KIAA1109Q2LD37 5005 aa5.6□□□□□ -1.51
VPS4A-203ENST00000564399 SHISA3A0PJX4 238 aa5.59□□□□□ -1.51
VPS4A-203ENST00000564399 SLC31A2O15432 143 aa5.59□□□□□ -1.51
VPS4A-203ENST00000564399 NBR2O15453 112 aa5.59□□□□□ -1.51
VPS4A-203ENST00000564399 SOX15O60248 233 aa5.59□□□□□ -1.51
VPS4A-203ENST00000564399 RGS11O94810 467 aa5.59□□□□□ -1.51
VPS4A-203ENST00000564399 MT-ND2P03891 347 aa5.59□□□□□ -1.51
VPS4A-203ENST00000564399 OR2T7P0C7T2 308 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms