RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 GNG10P50151 68 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 ABCA11PQ4W5N1 156 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 UTF1Q5T230 341 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 CENPVQ7Z7K6 275 aaPredicted RBP13.47□□□□□ -0.25
CLK3-210ENST00000563112 NDUFA11Q86Y39 141 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 THNSL2Q86YJ6 484 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 LYG1Q8N1E2 194 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 NKAIN3Q8N8D7 197 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 OR10X1Q8NGY0 326 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 MYDGFQ969H8 173 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 ARL11Q969Q4 196 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 OCSTAMPQ9BR26 566 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 MND1Q9BWT6 205 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 RAB9BQ9NP90 201 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 FKBP14Q9NWM8 211 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 ZNF581Q9P0T4 197 aa13.47□□□□□ -0.25
CLK3-210ENST00000563112 RRP15Q9Y3B9 282 aaKnown RBP13.47□□□□□ -0.25
CLK3-210ENST00000563112 PTGES3LE9PB15 166 aa13.46□□□□□ -0.25
CLK3-210ENST00000563112 ORC5O43913 435 aa13.46□□□□□ -0.25
CLK3-210ENST00000563112 CDK1P06493 297 aa13.46□□□□□ -0.25
CLK3-210ENST00000563112 RAB7AP51149 207 aa13.46□□□□□ -0.25
CLK3-210ENST00000563112 TMEM95Q3KNT9 176 aa13.46□□□□□ -0.25
CLK3-210ENST00000563112 RNLSQ5VYX0 342 aa13.46□□□□□ -0.25
CLK3-210ENST00000563112 MS4A15Q8N5U1 240 aa13.46□□□□□ -0.25
CLK3-210ENST00000563112 OR4F17Q8NGA8 305 aa13.46□□□□□ -0.25
CLK3-210ENST00000563112 OR5AU1Q8NGC0 362 aa13.46□□□□□ -0.25
CLK3-210ENST00000563112 OR52M1Q8NGK5 317 aa13.46□□□□□ -0.25
CLK3-210ENST00000563112 WIPF2Q8TF74 440 aaPredicted RBP13.46□□□□□ -0.25
CLK3-210ENST00000563112 CCDC107Q8WV48 283 aa13.46□□□□□ -0.25
CLK3-210ENST00000563112 OR4F4Q96R69 305 aa13.46□□□□□ -0.25
CLK3-210ENST00000563112 CITED2Q99967 270 aaPredicted RBP13.46□□□□□ -0.25
CLK3-210ENST00000563112 FAM90A10PA6NDY2 464 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 FAM90A18PA6NE21 464 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 FAM90A16PA6NEW6 464 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 FAM90A20PA6NIJ5 464 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 FAM90A7PA6NKC0 464 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 FAM90A12PA8MX19 464 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 FAM90A5PA8MXJ8 464 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 FAM90A23PA8MXZ1 464 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 AIPO00170 330 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 PIN1P1O15428 100 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 MT-ND4P03905 459 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 FAM90A15PP0C7V4 464 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 FAM90A13PP0C7W8 464 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 FAM90A14PP0C7W9 464 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 FAM90A24PP0C7X0 464 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 HES1Q14469 280 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 C9orf152Q5JTZ5 239 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 C6orf141Q5SZD1 244 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 RAB12Q6IQ22 244 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 ZNF497Q6ZNH5 498 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 C1QL4Q86Z23 238 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 OR8H3Q8N146 312 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 R3HDM4Q96D70 268 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 UQCC2Q9BRT2 126 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 SELENOIQ9C0D9 397 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 TRAPPC2LQ9UL33 140 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 MOB4Q9Y3A3 225 aa13.45□□□□□ -0.26
CLK3-210ENST00000563112 FAM90A9PA6NNJ1 464 aa13.44□□□□□ -0.26
CLK3-210ENST00000563112 SDCBPO00560 298 aaPredicted RBP13.44□□□□□ -0.26
CLK3-210ENST00000563112 SPINT2O43291 252 aa13.44□□□□□ -0.26
CLK3-210ENST00000563112 CRTAPO75718 401 aaPredicted RBP13.44□□□□□ -0.26
CLK3-210ENST00000563112 LPLP06858 475 aa13.44□□□□□ -0.26
CLK3-210ENST00000563112 SNRNP70P08621 437 aaKnown RBP13.44□□□□□ -0.26
CLK3-210ENST00000563112 MGMTP16455 207 aa13.44□□□□□ -0.26
CLK3-210ENST00000563112 DRAM1Q8N682 238 aa13.44□□□□□ -0.26
CLK3-210ENST00000563112 OR56B4Q8NH76 319 aa13.44□□□□□ -0.26
CLK3-210ENST00000563112 BANF2Q9H503 90 aa13.44□□□□□ -0.26
CLK3-210ENST00000563112 ETAA1Q9NY74 926 aa13.44□□□□□ -0.26
CLK3-210ENST00000563112 RCC2Q9P258 522 aaKnown RBP13.44□□□□□ -0.26
CLK3-210ENST00000563112 GHRLQ9UBU3 117 aa13.44□□□□□ -0.26
CLK3-210ENST00000563112 NKX1-2Q9UD57 310 aaPredicted RBP13.44□□□□□ -0.26
CLK3-210ENST00000563112 PEX16Q9Y5Y5 336 aa13.44□□□□□ -0.26
CLK3-210ENST00000563112 A0A1W2PPE3 182 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 C15orf65H3BRN8 121 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 CA11O75493 328 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 GAPDHP04406 335 aaKnown RBP13.43□□□□□ -0.26
CLK3-210ENST00000563112 GLAP06280 429 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 FUT3P21217 361 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 IL3RAP26951 378 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 GPR50Q13585 617 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 SPHARQ15513 63 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 ACSM3Q53FZ2 586 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 C6orf183Q5T699 404 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 C8orf31Q8N9H6 132 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 CST11Q9H112 138 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 GFOD1Q9NXC2 390 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 NOTCH3Q9UM47 2321 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 TPRKBQ9Y3C4 175 aa13.43□□□□□ -0.26
CLK3-210ENST00000563112 PLXNB1O43157 2135 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 A0A1W2PPI3 338 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 H0YHG0 523 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 CCRL2O00421 344 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 HSD17B6O14756 317 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 UBBP0CG47 229 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 TMEM11P17152 192 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 CD83Q01151 205 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 DIAPH2-AS1Q14236 149 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 MED22Q15528 200 aa13.42□□□□□ -0.26
CLK3-210ENST00000563112 TMEM30BQ3MIR4 351 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms