RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 RNPS1Q15287 305 aaKnown RBP4.76□□□□□ -1.65
LIMA1-215ENST00000552823 OR8G2PQ6IF36 304 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 FOXL2NBQ6ZUU3 175 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 GLRX5Q86SX6 157 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 CISD2Q8N5K1 135 aaKnown RBP4.76□□□□□ -1.65
LIMA1-215ENST00000552823 STOML3Q8TAV4 291 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 NANOS1Q8WY41 292 aaKnown RBP4.76□□□□□ -1.65
LIMA1-215ENST00000552823 BCL2L2Q92843 193 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-215ENST00000552823 ABHD14BQ96IU4 210 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 TLNRD1Q9H1K6 362 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 SAV1Q9H4B6 383 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-215ENST00000552823 WFDC1Q9HC57 220 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 CYTL1Q9NRR1 136 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 DUX4Q9UBX2 424 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 ARHGAP32A7KAX9 2087 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 CREBBPQ92793 2442 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 KALRNO60229 2985 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 TRAV24A0A0B4J272 114 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 CRYM-AS1A6NIL9 109 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 RPL36A-HNRNPH2H7BZ11 118 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 ST8SIA3O43173 380 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 CHST1O43916 411 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 TSPAN15O95858 294 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 OR2H2O95918 312 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 FBP1P09467 338 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 CBR1P16152 277 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 GCH1P30793 250 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 PPP1CCP36873 323 aaKnown RBP4.76□□□□□ -1.65
LIMA1-215ENST00000552823 DHODHQ02127 395 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 FAM27E3Q08E93 113 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 MRPL49Q13405 166 aaKnown RBP4.76□□□□□ -1.65
LIMA1-215ENST00000552823 ARL6IP1Q15041 203 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 HAGHQ16775 308 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 FAM76BQ5HYJ3 339 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 LIAT1Q6ZQX7 453 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 WDR86Q86TI4 376 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 KLF14Q8TD94 323 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-215ENST00000552823 ARL11Q969Q4 196 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 AKR1E2Q96JD6 320 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 DNTTIP1Q9H147 329 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 PCDHB16Q9NRJ7 776 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 CSPG4Q6UVK1 2322 aa4.76□□□□□ -1.65
LIMA1-215ENST00000552823 A0A0G2JRQ6 117 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 PQLC2LA1A4F0 135 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 FOXI3A8MTJ6 420 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-215ENST00000552823 TPPPO94811 219 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 GLAP06280 429 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 METTL15P1P0C7V9 234 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 SLC25A4P12235 298 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 MUC1P15941 1255 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-215ENST00000552823 PTAFRP25105 342 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 CFPP27918 469 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 UCP2P55851 309 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 FGF12P61328 243 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 SPRNQ5BIV9 151 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 SPANXN5Q5MJ07 72 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 FIP1L1Q6UN15 594 aaKnown RBP4.75□□□□□ -1.65
LIMA1-215ENST00000552823 FAM214BQ7L5A3 538 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 ZNF573Q86YE8 665 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 CMTM1Q8IZ96 169 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 OR5T1Q8NG75 326 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 RNF141Q8WVD5 230 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 OR5P3Q8WZ94 311 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 ISOC2Q96AB3 205 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 DHRS9Q9BPW9 319 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 NMES1Q9C002 83 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 PRDM14Q9GZV8 571 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 RGCCQ9H4X1 137 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 RHOFQ9HBH0 211 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 PLA2G2EQ9NZK7 142 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 FBLN5Q9UBX5 448 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 NUP50Q9UKX7 468 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 OR5H1A6NKK0 313 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 DBX1A6NMT0 343 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 C9JQL5 133 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 TM4SF5O14894 197 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 OPN1MWP04001 364 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 OPN1MW2P0DN77 364 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 OPN1MW3P0DN78 364 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 RPL35P42766 123 aaKnown RBP4.75□□□□□ -1.65
LIMA1-215ENST00000552823 GLIPR1P48060 266 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 NPBWR1P48145 328 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 ELLP55199 621 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-215ENST00000552823 MIDNQ504T8 468 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 WFDC8Q8IUA0 241 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 CCDC71LQ8N9Z2 235 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 OR5C1Q8NGR4 320 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 Q9N2K0 584 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 TMEM100Q9NV29 134 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 CACNG5Q9UF02 275 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 PUS1Q9Y606 427 aaKnown RBP eCLIP4.75□□□□□ -1.65
LIMA1-215ENST00000552823 SPENQ96T58 3664 aaKnown RBP4.75□□□□□ -1.65
LIMA1-215ENST00000552823 NOTCH3Q9UM47 2321 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 TRAV17A0A0B4J275 112 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 ATP6V1G2-DDX39BF2Z307 99 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 ST8SIA5O15466 376 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 PSPNO60542 156 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 CYC1P08574 325 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 HOXD4P09016 255 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-215ENST00000552823 CECR9P0C854 216 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms