RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 BVESQ8NE79 360 aa12.96□□□□□ -0.34
CUX1-214ENST00000550008 PINLYPA6NC86 204 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 CYTIPO60759 359 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 FGF7P21781 194 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 ACP1P24666 158 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 PPP1CCP36873 323 aaKnown RBP12.95□□□□□ -0.34
CUX1-214ENST00000550008 FHL1Q13642 323 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 CALHM1Q8IU99 346 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 RBMXL3Q8N7X1 1067 aaKnown RBP12.95□□□□□ -0.34
CUX1-214ENST00000550008 FADS6Q8N9I5 356 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 GMPPAQ96IJ6 420 aaPredicted RBP12.95□□□□□ -0.34
CUX1-214ENST00000550008 RPL36A-HNRNPH2H7BZ11 118 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 PSG2P11465 335 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 VDAC1P21796 283 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 DYNLT3P51808 116 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 FOXG1P55316 489 aaPredicted RBP12.95□□□□□ -0.34
CUX1-214ENST00000550008 CEACAM21Q3KPI0 293 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 C10orf128Q5T292 105 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 CBLN2Q8IUK8 224 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 SHARPINQ9H0F6 387 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 CNIH1O95406 144 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 HMGN3Q15651 99 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 GBF1Q92538 1859 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 IGKV1-9A0A0C4DH69 117 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 IGFBP7Q16270 282 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 COMMD5Q9GZQ3 224 aa12.95□□□□□ -0.34
CUX1-214ENST00000550008 ZNF703Q9H7S9 590 aaPredicted RBP12.95□□□□□ -0.34
CUX1-214ENST00000550008 MFNGO00587 321 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 CYB5BO43169 146 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 ZFP36L1Q07352 338 aaKnown RBP12.94□□□□□ -0.34
CUX1-214ENST00000550008 MPV17LQ2QL34 196 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 Q96M66 194 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 CXXC4Q9H2H0 198 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 ZNF355PQ9NSJ1 428 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 MPTX1A8MV57 137 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 TMPRSS2O15393 492 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 ERVS71-1P61550 626 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 CCL8P80075 99 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 KIAA0141Q14154 515 aaPredicted RBP12.94□□□□□ -0.34
CUX1-214ENST00000550008 IL34Q6ZMJ4 242 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 LINC00862A6NCI5 91 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 SLC25A6P12236 298 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 UCP2P55851 309 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 HTD2P86397 168 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 RUNX1Q01196 453 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 ISOC2Q96AB3 205 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 SMIM7Q9BQ49 75 aa12.94□□□□□ -0.34
CUX1-214ENST00000550008 ST8SIA5O15466 376 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 SLC25A4P12235 298 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 MOB1BQ7L9L4 216 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 RTN4RL2Q86UN3 420 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 C1orf87Q8N0U7 546 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 TMEM54Q969K7 222 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 SLC25A22Q9H936 323 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 MMP26Q9NRE1 261 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 TUBG2Q9NRH3 451 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 IL36RNQ9UBH0 155 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 FGF11Q92914 225 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 TVP23CQ96ET8 276 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 RCC2Q9P258 522 aaKnown RBP12.93□□□□□ -0.34
CUX1-214ENST00000550008 OR2W1Q9Y3N9 320 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 MGST1P10620 155 aaKnown RBP12.93□□□□□ -0.34
CUX1-214ENST00000550008 SLC38A11Q08AI6 406 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 CXorf66Q5JRM2 361 aaPredicted RBP12.93□□□□□ -0.34
CUX1-214ENST00000550008 SLC36A1Q7Z2H8 476 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 FGFBP3Q8TAT2 258 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 BOD1Q96IK1 185 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 LIPGQ9Y5X9 500 aa12.93□□□□□ -0.34
CUX1-214ENST00000550008 DEFA4P12838 97 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 RPS2P15880 293 aaKnown RBP12.92□□□□□ -0.34
CUX1-214ENST00000550008 FGF12P61328 243 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 HLA-DRB3P79483 266 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 IL13RA2Q14627 380 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 TMEM108Q6UXF1 575 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 TRAF4Q9BUZ4 470 aaPredicted RBP12.92□□□□□ -0.34
CUX1-214ENST00000550008 NDRG3Q9UGV2 375 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 CACNA1AO00555 2505 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 LOC102723996A0A087X1L8 192 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 A8MXE2 369 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 SYNGR2O43760 224 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 OR7C2O60412 319 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 G6PCP35575 357 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 HIST2H3AQ71DI3 136 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 PHYHIPLQ96FC7 376 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 ACY3Q96HD9 319 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 SSUH2Q9Y2M2 353 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 A0A1W2PRD5 423 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 A0A1W2PRF3 423 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 A0A1W2PRM7 423 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 IGFBP3P17936 291 aaPredicted RBP12.92□□□□□ -0.34
CUX1-214ENST00000550008 ID4P47928 161 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 OVCH2Q7RTZ1 564 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 UBAC2Q8NBM4 344 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 ABHD14BQ96IU4 210 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 LOXL4Q96JB6 756 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.92□□□□□ -0.34
CUX1-214ENST00000550008 UQCC1Q9NVA1 299 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 WSB1Q9Y6I7 421 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 PLXNA2O75051 1894 aa12.92□□□□□ -0.34
CUX1-214ENST00000550008 TMEM218A2RU14 115 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms