RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 C6orf62Q9GZU0 229 aaPredicted RBP11.88□□□□□ -0.51
TNFRSF1A-216ENST00000543995 RIMS4Q9H426 269 aaPredicted RBP11.88□□□□□ -0.51
TNFRSF1A-216ENST00000543995 C12orf4Q9NQ89 552 aa11.88□□□□□ -0.51
TNFRSF1A-216ENST00000543995 KCNIP1Q9NZI2 227 aa11.88□□□□□ -0.51
TNFRSF1A-216ENST00000543995 IGHV3OR16-10A0A075B7F0 116 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 GZMHP20718 246 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 OMGP23515 440 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 PRTN3P24158 256 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 SSTR5P35346 364 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 C17orf58Q2M2W7 97 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 TMEM69Q5SWH9 247 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 C6orf183Q5T699 404 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 PDZD9Q8IXQ8 264 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 IZUMO1Q8IYV9 350 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 GAPTQ8N292 157 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 PRR18Q8N4B5 295 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 MCFD2Q8NI22 146 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 ARL11Q969Q4 196 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 SLIRPQ9GZT3 109 aaKnown RBP11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 CALYQ9NYX4 217 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 CDC42EP3Q9UKI2 254 aa11.87□□□□□ -0.51
TNFRSF1A-216ENST00000543995 KBTBD11-OT1A0A1B0GTJ5 212 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 XRCC3O43542 346 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 NAPSAO96009 420 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 RBP4P02753 201 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 GSTP1P09211 210 aaKnown RBP11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 IGHV1-8P0DP01 117 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 RCC1P18754 421 aaPredicted RBP11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 ELK1P19419 428 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 TALDO1P37837 337 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 ZNF260Q3ZCT1 412 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 CHRFAM7AQ494W8 412 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 PRAMEF5Q5TYX0 476 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 GPR157Q5UAW9 335 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 NCR3LG1Q68D85 454 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 TRAT1Q6PIZ9 186 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 C11orf42Q8N5U0 333 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 RFESDQ8TAC1 157 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 RAB9BQ9NP90 201 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 ADAM30Q9UKF2 790 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 ELF5Q9UKW6 265 aaPredicted RBP11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 TMEM235A6NFC5 223 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 CTDSP2O14595 271 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 SPINT2O43291 252 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 ORC5O43913 435 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 HOXB4P17483 251 aaPredicted RBP11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 COX7A1P24310 79 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 MNDAP41218 407 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 GNG2P59768 71 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 KLRD1Q13241 179 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 LTC4SQ16873 150 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 HACD4Q5VWC8 232 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 OR52W1Q6IF63 320 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 HEPN1Q6WQI6 88 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 MOB1BQ7L9L4 216 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 UBALD1Q8TB05 177 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 HEXA-AS1Q9H8Q6 139 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 UNKLQ9H9P5 680 aaKnown RBP11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 TAF9BQ9HBM6 251 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 IDI2-AS1Q9NZ38 188 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 SESN1Q9Y6P5 492 aa11.86□□□□□ -0.51
TNFRSF1A-216ENST00000543995 C12orf77C9JDV5 145 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 MMP23AO75900 390 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 CGB3P0DN86 165 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 CGB7P0DN87 165 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 IGHV4-38-2P0DP08 117 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 NFYBP25208 207 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 TAS2R20P59543 309 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 PITPNAQ00169 270 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 GUCA2AQ02747 115 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 MADCAM1Q13477 382 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 PNLIPRP3Q17RR3 467 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 LAX1Q8IWV1 398 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 OR13D1Q8NGV5 346 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 NUDCD2Q8WVJ2 157 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 SUCNR1Q9BXA5 334 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 MBNL3Q9NUK0 354 aaKnown RBP11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 EXTL2Q9UBQ6 330 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 NUP50Q9UKX7 468 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 MRPS7Q9Y2R9 242 aaKnown RBP11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 HIVEP2P31629 2446 aa11.85□□□□□ -0.51
TNFRSF1A-216ENST00000543995 TRBV6-6A0A0A6YYG2 114 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 CENPVL3A0A0U1RRI6 287 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 A0A1W2PRD5 423 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 A0A1W2PRF3 423 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 A0A1W2PRM7 423 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 FAM172BPA6NC97 362 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 NPIPB11E5RHQ5 1161 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 RNASEK-C17orf49H0YIS7 233 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 C15orf65H3BRN8 121 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 HBZP02008 142 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 FCGR3AP08637 254 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 SRD5A1P18405 259 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 GDNFP39905 211 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 KLF17Q5JT82 389 aaPredicted RBP11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 ZNF880Q6PDB4 577 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 PNKDQ8N490 385 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 TNFRSF14Q92956 283 aa11.84□□□□□ -0.51
TNFRSF1A-216ENST00000543995 KIRREL1Q96J84 757 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms