RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 CLVS2Q5SYC1 327 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 ERICH5Q6P6B1 374 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 SLC25A26Q70HW3 274 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 SHFQ7M4L6 423 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 Q8N402 240 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 SYT8Q8NBV8 401 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 HAVCR2Q8TDQ0 301 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 INTS14Q96SY0 518 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 SH3GL1Q99961 368 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 DGCR6LQ9BY27 220 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 ZCCHC4Q9H5U6 513 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 EGLN3Q9H6Z9 239 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 PLEKHA1Q9HB21 404 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 SLC25A19Q9HC21 320 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 SCRT2Q9NQ03 307 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 GPR84Q9NQS5 396 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 PLSCR3Q9NRY6 295 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 ZNF355PQ9NSJ1 428 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 SLC2A8Q9NY64 477 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 FBXL17Q9UF56 701 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 MYRFQ9Y2G1 1151 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 GSTK1Q9Y2Q3 226 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 SELENOKQ9Y6D0 94 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 ENPP4Q9Y6X5 453 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 VPS13DQ5THJ4 4388 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 TMEM269A0A1B0GVZ9 245 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 ODAMA1E959 279 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 ZNF729A6NN14 1252 aaPredicted RBP3.59□□□□□ -1.83
LIMS1-214ENST00000542845 IGLL5B9A064 214 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 CXCR6O00574 342 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 HSPB6O14558 160 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 SH2D1BO14796 132 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 MITFO75030 526 aaPredicted RBP3.59□□□□□ -1.83
LIMS1-214ENST00000542845 NDUFB8O95169 186 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 IFNA4P05014 189 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 ZNF44P15621 663 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 BCL3P20749 454 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 ERP29P30040 261 aaKnown RBP3.59□□□□□ -1.83
LIMS1-214ENST00000542845 BLVRBP30043 206 aaPredicted RBP3.59□□□□□ -1.83
LIMS1-214ENST00000542845 GLP1RP43220 463 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 MRPL19P49406 292 aaKnown RBP3.59□□□□□ -1.83
LIMS1-214ENST00000542845 HCCSP53701 268 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 SYNJ2BPP57105 145 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 TPPP2P59282 170 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 ZNF45Q02386 682 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 ZNF91Q05481 1191 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 RAB40BQ12829 278 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 EBI3Q14213 229 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 ATXN7L3Q14CW9 347 aaPredicted RBP3.59□□□□□ -1.83
LIMS1-214ENST00000542845 MMDQ15546 238 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 BAK1Q16611 211 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 ODF4Q2M2E3 257 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 C17orf58Q2M2W7 97 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 WDR93Q6P2C0 686 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 TMEM179BQ7Z7N9 219 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 ENTHD1Q8IYW4 607 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 FAM58AQ8N1B3 248 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 Q8N6K4 173 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 RNF148Q8N7C7 305 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 ZNF645Q8N7E2 425 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 TCEANCQ8N8B7 351 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 DNAAF1Q8NEP3 725 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 OR2T12Q8NG77 320 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 OR9G4Q8NGQ1 327 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 RP9Q8TA86 221 aaKnown RBP3.59□□□□□ -1.83
LIMS1-214ENST00000542845 NPIPB3Q92617 1050 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 CORO2AQ92828 525 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 TEAD3Q99594 435 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 THAP7Q9BT49 309 aaPredicted RBP3.59□□□□□ -1.83
LIMS1-214ENST00000542845 CCDC28BQ9BUN5 200 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 TTTY10Q9BZA0 68 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 PBOV1Q9GZY1 135 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 PPIL3Q9H2H8 161 aaKnown RBP3.59□□□□□ -1.83
LIMS1-214ENST00000542845 ANKRD19PQ9H560 264 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 EXOSC4Q9NPD3 245 aaKnown RBP3.59□□□□□ -1.83
LIMS1-214ENST00000542845 DCAF13Q9NV06 445 aaKnown RBP3.59□□□□□ -1.83
LIMS1-214ENST00000542845 RBFOX1Q9NWB1 397 aaKnown RBP3.59□□□□□ -1.83
LIMS1-214ENST00000542845 IDI2-AS1Q9NZ38 188 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 ERGIC3Q9Y282 383 aa3.59□□□□□ -1.83
LIMS1-214ENST00000542845 HERC1Q15751 4861 aa3.59□□□□□ -1.84
LIMS1-214ENST00000542845 PKHD1P08F94 4074 aa3.59□□□□□ -1.84
LIMS1-214ENST00000542845 UBR4Q5T4S7 5183 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 MEIKINA0A087WXM9 373 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 TRAV39A0A0B4J263 110 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 A0A0U1RQV5 110 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 KBTBD11-OT1A0A1B0GTJ5 212 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 A0A1W2PRQ8 180 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 TMEM120BA0PK00 339 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 FAM90A10PA6NDY2 464 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 FAM220BPB1ANY3 271 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 RTL8CO15255 209 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 SPRY2O43597 315 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 SOX15O60248 233 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 SELENOFO60613 162 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 DHRS3O75911 302 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 GADD45GO95257 159 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 OR2H2O95918 312 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 CYB5AP00167 134 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 TRGV3P03979 118 aa3.58□□□□□ -1.84
LIMS1-214ENST00000542845 RBMY1A1P0DJD3 496 aaKnown RBP3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms