RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 CST7O76096 145 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 SLC10A1Q14973 349 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 OR8B8Q15620 311 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 HAGHQ16775 308 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 HIKESHIQ53FT3 197 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 SPSB3Q6PJ21 355 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 ZNF818PQ6ZRF7 136 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 TMEM217Q8N7C4 229 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 TMEM45BQ96B21 275 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 GLRX2Q9NS18 164 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 IGKV3D-15A0A087WSY6 115 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 A0A1B0GW64 132 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 ZNF727A8MUV8 499 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 AP4M1O00189 453 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 HSPB6O14558 160 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 NKX2-8O15522 239 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 PITX3O75364 302 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 SCTP09683 121 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 RND3P61587 244 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 RAB1AP62820 205 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 SELENOHQ8IZQ5 122 aaKnown RBP10.71□□□□□ -0.7
RNF4-222ENST00000541204 GAPTQ8N292 157 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 TMEM252Q8N6L7 170 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 EXTL1Q92935 676 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 MALSU1Q96EH3 234 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 PLEKHF2Q9H8W4 249 aa10.71□□□□□ -0.7
RNF4-222ENST00000541204 LYRM2Q9NU23 88 aaPredicted RBP10.71□□□□□ -0.7
RNF4-222ENST00000541204 KLF13Q9Y2Y9 288 aaPredicted RBP10.71□□□□□ -0.7
RNF4-222ENST00000541204 TRAV20A0A0B4J274 112 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 FBP1P09467 338 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 DYNLT3P51808 116 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 RUNX1Q01196 453 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 ODF3L1Q8IXM7 274 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 TMEM56Q96MV1 263 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 HS3ST6Q96QI5 342 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 TCEAL7Q9BRU2 100 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 PLSCR2Q9NRY7 297 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 MIOXQ9UGB7 285 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 ZNF391Q9UJN7 358 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 TMEM56-RWDD3S4R434 201 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 A0A1W2PR80 420 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 RPL36A-HNRNPH2H7BZ11 118 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 TMEM50AO95807 157 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 CD46P15529 392 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 BCL3P20749 454 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 EPHA1P21709 976 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 CCL11P51671 97 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 GPM6AP51674 278 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 VAMP2P63027 116 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 SRPXP78539 464 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 TSC22D1Q15714 1073 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 IGFBP7Q16270 282 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 HEPN1Q6WQI6 88 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 MDS2Q8NDY4 140 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 TCTEX1D2Q8WW35 142 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 YPEL4Q96NS1 127 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 MMP24Q9Y5R2 645 aa10.7□□□□□ -0.7
RNF4-222ENST00000541204 IGKV1D-13A0A0B4J2D9 117 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 H3BQ15 152 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 HSD17B6O14756 317 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 WISP2O76076 250 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 IGKV1-13P0DP09 117 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 EIF2S3P41091 472 aaKnown RBP10.69□□□□□ -0.7
RNF4-222ENST00000541204 RPS10P46783 165 aaKnown RBP10.69□□□□□ -0.7
RNF4-222ENST00000541204 ZNF766Q5HY98 468 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 FAM185AQ8N0U4 392 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 C1QTNF5Q9BXJ0 243 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 PARD6AQ9NPB6 346 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 IL36RNQ9UBH0 155 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 ZFHX2Q9C0A1 2572 aaPredicted RBP10.69□□□□□ -0.7
RNF4-222ENST00000541204 H0YL77 283 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 ATXN7O15265 892 aaPredicted RBP10.69□□□□□ -0.7
RNF4-222ENST00000541204 TNFSF12O43508 249 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 IFNA17P01571 189 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 TK1P04183 234 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 HERPUD1Q15011 391 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 SPATA46Q5T0L3 261 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 MRPL21Q7Z2W9 205 aaKnown RBP10.69□□□□□ -0.7
RNF4-222ENST00000541204 RAB39BQ96DA2 213 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 SLC25A31Q9H0C2 315 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 SPRR3Q9UBC9 169 aa10.69□□□□□ -0.7
RNF4-222ENST00000541204 RIF1Q5UIP0 2472 aaKnown RBP10.69□□□□□ -0.7
RNF4-222ENST00000541204 HSPA12AO43301 675 aa10.68□□□□□ -0.7
RNF4-222ENST00000541204 PPIHO43447 177 aaKnown RBP10.68□□□□□ -0.7
RNF4-222ENST00000541204 HAAOP46952 286 aa10.68□□□□□ -0.7
RNF4-222ENST00000541204 ZNF343Q6P1L6 599 aa10.68□□□□□ -0.7
RNF4-222ENST00000541204 MUCL1Q96DR8 90 aa10.68□□□□□ -0.7
RNF4-222ENST00000541204 SPIN2AQ99865 258 aa10.68□□□□□ -0.7
RNF4-222ENST00000541204 SPIN2BQ9BPZ2 258 aa10.68□□□□□ -0.7
RNF4-222ENST00000541204 OR51M1Q9H341 326 aa10.68□□□□□ -0.7
RNF4-222ENST00000541204 SMDT1Q9H4I9 107 aa10.68□□□□□ -0.7
RNF4-222ENST00000541204 Q9N2K0 584 aa10.68□□□□□ -0.7
RNF4-222ENST00000541204 FAM86C1Q9NVL1 165 aa10.68□□□□□ -0.7
RNF4-222ENST00000541204 SLC22A20A6NK97 555 aa10.68□□□□□ -0.7
RNF4-222ENST00000541204 YIF1AO95070 293 aa10.68□□□□□ -0.7
RNF4-222ENST00000541204 SRP19P09132 144 aaKnown RBP10.68□□□□□ -0.7
RNF4-222ENST00000541204 MAS1LP35410 378 aa10.68□□□□□ -0.7
RNF4-222ENST00000541204 TAGLN2P37802 199 aaKnown RBP10.68□□□□□ -0.7
RNF4-222ENST00000541204 ZNF154Q13106 437 aa10.68□□□□□ -0.7
RNF4-222ENST00000541204 PRDX4Q13162 271 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms