RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 OR1L4Q8NGR5 311 aa12.24□□□□□ -0.45
USP3-204ENST00000540797 C14orf79Q96F83 325 aa12.24□□□□□ -0.45
USP3-204ENST00000540797 PIMREGQ9BSJ6 248 aa12.24□□□□□ -0.45
USP3-204ENST00000540797 SLC25A22Q9H936 323 aa12.24□□□□□ -0.45
USP3-204ENST00000540797 LHFPL6Q9Y693 200 aa12.24□□□□□ -0.45
USP3-204ENST00000540797 POLR2GP62487 172 aaKnown RBP eCLIP12.23□□□□□ -0.45
USP3-204ENST00000540797 ROM1Q03395 351 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 ZNF658BQ4V348 819 aaPredicted RBP12.23□□□□□ -0.45
USP3-204ENST00000540797 MRPL14Q6P1L8 145 aaKnown RBP12.23□□□□□ -0.45
USP3-204ENST00000540797 CLEC18BQ6UXF7 455 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 NFAM1Q8NET5 270 aaPredicted RBP12.23□□□□□ -0.45
USP3-204ENST00000540797 LINC01560Q8TB33 94 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 PRNDQ9UKY0 176 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 SYNGR1O43759 233 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 SYNGR2O43760 224 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 SLC25A5P05141 298 aaKnown RBP12.23□□□□□ -0.45
USP3-204ENST00000540797 SMIM17P0DL12 118 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 NAT2P11245 290 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 NQO2P16083 231 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 NAAAQ02083 359 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 ATP6V1FQ16864 119 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 OR10A7Q8NGE5 316 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 CHODLQ9H9P2 273 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 ADAP1O75689 374 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 RHOBP62745 196 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 H3F3AP84243 136 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 DHRS9Q9BPW9 319 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 SIRT4Q9Y6E7 314 aaPredicted RBP12.23□□□□□ -0.45
USP3-204ENST00000540797 MPC2O95563 127 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 EFNB2P52799 333 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 FGF12P61328 243 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 OR5R1Q8NH85 324 aa12.23□□□□□ -0.45
USP3-204ENST00000540797 HDHD3Q9BSH5 251 aaPredicted RBP12.23□□□□□ -0.45
USP3-204ENST00000540797 C9orf172C9J069 976 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 K7N7A8 449 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 CD1AP06126 327 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 DAOP14920 347 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 VDAC1P21796 283 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 TNFSF10P50591 281 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 NCR3LG1Q68D85 454 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 KLF14Q8TD94 323 aaPredicted RBP12.22□□□□□ -0.45
USP3-204ENST00000540797 BLNKQ8WV28 456 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 PRR13Q9NZ81 148 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 CACNA1EQ15878 2313 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 NSUN5P2Q63ZY6 315 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 MARS2Q96GW9 593 aaKnown RBP12.22□□□□□ -0.45
USP3-204ENST00000540797 GPR137Q96N19 417 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 TMEM208Q9BTX3 173 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 SLC2A9Q9NRM0 540 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 MRPL22Q9NWU5 206 aaKnown RBP12.22□□□□□ -0.45
USP3-204ENST00000540797 COX5BP10606 129 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 CD59P13987 128 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 ECSCRQ19T08 205 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 PLAC9Q5JTB6 97 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 PRSS54Q6PEW0 395 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 Q6ZT83 130 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 ZNF680Q8NEM1 530 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 IMMP1LQ96LU5 166 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 ZNF107Q9UII5 783 aaPredicted RBP12.22□□□□□ -0.45
USP3-204ENST00000540797 OR10Z1Q8NGY1 313 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 DTD1Q8TEA8 209 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 SH2D2AQ9NP31 389 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 POMT1Q9Y6A1 747 aa12.22□□□□□ -0.45
USP3-204ENST00000540797 ADAM10O14672 748 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 NDUFA2O43678 99 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 OR1B1Q8NGR6 318 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 TGFBR3LH3BV60 316 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 RAB29O14966 203 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 UMODP07911 640 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 SUCLG1P53597 346 aaKnown RBP12.21□□□□□ -0.45
USP3-204ENST00000540797 PJVKQ0ZLH3 352 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 SNAI3Q3KNW1 292 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 PGLYRP3Q96LB9 341 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 ABHD14AQ9BUJ0 271 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 CTDSP1Q9GZU7 261 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 OTOFQ9HC10 1997 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 TRBV23-1A0A0A0MS06 115 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 FSTP19883 344 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 TEX29Q8N6K0 151 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 WNT5BQ9H1J7 359 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 HILPDAQ9Y5L2 63 aa12.21□□□□□ -0.45
USP3-204ENST00000540797 SYNGR3O43761 229 aa12.21□□□□□ -0.46
USP3-204ENST00000540797 OR2H2O95918 312 aa12.21□□□□□ -0.46
USP3-204ENST00000540797 G6PCP35575 357 aa12.21□□□□□ -0.46
USP3-204ENST00000540797 HOGA1Q86XE5 327 aa12.21□□□□□ -0.46
USP3-204ENST00000540797 PTX4Q96A99 478 aa12.21□□□□□ -0.46
USP3-204ENST00000540797 MRGPRFQ96AM1 343 aa12.21□□□□□ -0.46
USP3-204ENST00000540797 GP6Q9HCN6 339 aa12.21□□□□□ -0.46
USP3-204ENST00000540797 DICER1Q9UPY3 1922 aaKnown RBP12.21□□□□□ -0.46
USP3-204ENST00000540797 MPV17P39210 176 aa12.21□□□□□ -0.46
USP3-204ENST00000540797 NKX6-2Q9C056 277 aaPredicted RBP12.21□□□□□ -0.46
USP3-204ENST00000540797 IL19Q9UHD0 177 aa12.21□□□□□ -0.46
USP3-204ENST00000540797 RALGAPA2Q2PPJ7 1873 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 CYB5R3P00387 301 aaPredicted RBP12.2□□□□□ -0.46
USP3-204ENST00000540797 ZFP36L1Q07352 338 aaKnown RBP12.2□□□□□ -0.46
USP3-204ENST00000540797 SNX22Q96L94 193 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 MIXL1Q9H2W2 232 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 Q9N2K0 584 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 APELAP0DMC3 54 aa12.2□□□□□ -0.46
USP3-204ENST00000540797 GFRA1P56159 465 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms