RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	DEFB125	Q8N687	156 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	ARIH2OS	Q8N7S6	290 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	C5orf17	Q8NAS9	161 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	ST6GALNAC3	Q8NDV1	305 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	OR9G4	Q8NGQ1	327 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	OR52P1P	Q8NH57	321 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	DCUN1D4	Q92564	292 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	DAZL	Q92904	295 aa	Known RBP	4.75	□□□□□ -1.65
CD44-231	ENST00000531110	RAB8B	Q92930	207 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	OR10C1	Q96KK4	312 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	DNAJC30	Q96LL9	226 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	IP6K3	Q96PC2	410 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	SEPHS2	Q99611	448 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	HSPB9	Q9BQS6	159 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	LRRC61	Q9BV99	259 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	SCRT1	Q9BWW7	348 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	MAP1LC3C	Q9BXW4	147 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	FGFBP2	Q9BYJ0	223 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	NMNAT2	Q9BZQ4	307 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	POLR2J2	Q9GZM3	115 aa	Known RBP	4.75	□□□□□ -1.65
CD44-231	ENST00000531110	S1PR5	Q9H228	398 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	PARL	Q9H300	379 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	FZD8	Q9H461	694 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	FGF20	Q9NP95	211 aa	Predicted RBP	4.75	□□□□□ -1.65
CD44-231	ENST00000531110	GPR84	Q9NQS5	396 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	TMEM106B	Q9NUM4	274 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	FAM206A	Q9NX38	181 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	ZNF319	Q9P2F9	582 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	THAP10	Q9P2Z0	257 aa	Predicted RBP	4.75	□□□□□ -1.65
CD44-231	ENST00000531110	PILRB	Q9UKJ0	227 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	WDR45	Q9Y484	360 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	YIPF1	Q9Y548	306 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	NRXN3	Q9Y4C0	1643 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	FOCAD	Q5VW36	1801 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	COL14A1	Q05707	1796 aa	Known RBP	4.74	□□□□□ -1.65
CD44-231	ENST00000531110	STRC	Q7RTU9	1775 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110		A0A087WX48	190 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	TRAV14DV4	A0A0A6YYC5	116 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	KIR2DS1	A0A191URI9	304 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110		A0A1B0GUV1	79 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	MEIS3P1	A6NDR6	274 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	TMEM235	A6NFC5	223 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	SMIM9	A6NGZ8	99 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	ANKRD30BL	A7E2S9	258 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	C21orf140	B9A014	251 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	UMAD1	C9J7I0	102 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	ZNF878	C9JN71	531 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	CDC42EP2	O14613	210 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	DEGS1	O15121	323 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	EDIL3	O43854	480 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	CD160	O95971	181 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	HLA-DRB1	P01911	266 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	HSPB1	P04792	205 aa	Known RBP	4.74	□□□□□ -1.65
CD44-231	ENST00000531110	ICAM1	P05362	532 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	TACSTD2	P09758	323 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	OR12D1	P0DN82	309 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	IGLC2	P0DOY2	106 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	IGLC3	P0DOY3	106 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	HIST1H1E	P10412	219 aa	Known RBP	4.74	□□□□□ -1.65
CD44-231	ENST00000531110	ADRA2C	P18825	462 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	ALOX5AP	P20292	161 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	PRKACG	P22612	351 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	ADORA2B	P29275	332 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	SLC6A6	P31641	620 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	PYCR1	P32322	319 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	ARL2	P36404	184 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	KIR2DS4	P43632	304 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	SLC6A12	P48065	614 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	LHX2	P50458	406 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	VAMP7	P51809	220 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	HNRNPA3	P51991	378 aa	Known RBP	4.74	□□□□□ -1.65
CD44-231	ENST00000531110	H2BFS	P57053	126 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	S100A10	P60903	97 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	NTHL1	P78549	312 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	POU3F1	Q03052	451 aa	Predicted RBP	4.74	□□□□□ -1.65
CD44-231	ENST00000531110	MYBPH	Q13203	477 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	ELAVL3	Q14576	367 aa	Known RBP	4.74	□□□□□ -1.65
CD44-231	ENST00000531110	KIR2DS1	Q14954	304 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	TMEM97	Q5BJF2	176 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	PPP1R27	Q86WC6	154 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	GKN2	Q86XP6	184 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	OR8I2	Q8N0Y5	310 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	LRRC25	Q8N386	305 aa	Predicted RBP	4.74	□□□□□ -1.65
CD44-231	ENST00000531110	MUC15	Q8N387	334 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	PGBD5	Q8N414	524 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	OR2T12	Q8NG77	320 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	OR1N2	Q8NGR9	330 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	OR13G1	Q8NGZ3	307 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	OR4F5	Q8NH21	305 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	SLC25A40	Q8TBP6	338 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110		Q8WTZ3	238 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	APOBEC3D	Q96AK3	386 aa	Predicted RBP	4.74	□□□□□ -1.65
CD44-231	ENST00000531110	APH1A	Q96BI3	265 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	TBX5	Q99593	518 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	GINS3	Q9BRX5	216 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	VN1R1	Q9GZP7	353 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	REEP1	Q9H902	201 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	TMEM9B	Q9NQ34	198 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	CA10	Q9NS85	328 aa		4.74	□□□□□ -1.65
CD44-231	ENST00000531110	TAS2R16	Q9NYV7	291 aa		4.74	□□□□□ -1.65

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