RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 MEIKINA0A087WXM9 373 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 TRBV23-1A0A0A0MS06 115 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 TRBV6-6A0A0A6YYG2 114 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 MEIS3P1A6NDR6 274 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 CTDSPLO15194 276 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 CD3GP09693 182 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 PPIAL4GP0DN37 164 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 RCC1P18754 421 aaPredicted RBP12.6□□□□□ -0.39
LSM1-203ENST00000520755 GNG2P59768 71 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 RPL31P62899 125 aaKnown RBP12.6□□□□□ -0.39
LSM1-203ENST00000520755 ARFRP1Q13795 201 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 SPANXN2Q5MJ10 180 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 LY6G5BQ8NDX9 201 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 OR52I2Q8NH67 350 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 MAFIPQ8WZ33 124 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 NCOR1P1Q9H4R4 102 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 MBNL3Q9NUK0 354 aaKnown RBP12.6□□□□□ -0.39
LSM1-203ENST00000520755 ONECUT1Q9UBC0 465 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 ZNF230Q9UIE0 474 aaPredicted RBP12.6□□□□□ -0.39
LSM1-203ENST00000520755 AUP1Q9Y679 476 aa12.6□□□□□ -0.39
LSM1-203ENST00000520755 TEP1Q99973 2627 aaKnown RBP12.59□□□□□ -0.39
LSM1-203ENST00000520755 AVPP01185 164 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 LIPFP07098 398 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 CGB3P0DN86 165 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 CGB7P0DN87 165 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 PRSS3P35030 304 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 GLP1RP43220 463 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 DLX6P56179 175 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 ARF6P62330 175 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 PAX8Q06710 450 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 TRAPPC6BQ86SZ2 158 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 GVQW1Q8N7I0 195 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 MRGPRDQ8TDS7 321 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 CCDC107Q8WV48 283 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 SMIM4Q8WVI0 70 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 Q9N2K0 584 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 TMEM160Q9NX00 188 aa12.59□□□□□ -0.39
LSM1-203ENST00000520755 LPLP06858 475 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 CCL3L1P16619 93 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 HNF1AP20823 631 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 DTYMKP23919 212 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 PTBP1P26599 531 aaKnown RBP eCLIP12.58□□□□□ -0.48e-8■■■■■ 45.8
LSM1-203ENST00000520755 SSTR5P35346 364 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 MEF2CQ06413 473 aaPredicted RBP12.58□□□□□ -0.4
LSM1-203ENST00000520755 HMGN3Q15651 99 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 METTL11BQ5VVY1 283 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 TMEM200BQ69YZ2 307 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 C1orf229Q6ZS94 237 aaPredicted RBP12.58□□□□□ -0.4
LSM1-203ENST00000520755 CORO2AQ92828 525 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 SNAPC3Q92966 411 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 TRIM63Q969Q1 353 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 PCGF1Q9BSM1 259 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 SCPEP1Q9HB40 452 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 CHMP1AQ9HD42 196 aaPredicted RBP12.58□□□□□ -0.4
LSM1-203ENST00000520755 RABL2AQ9UBK7 228 aaPredicted RBP12.58□□□□□ -0.4
LSM1-203ENST00000520755 OPN4Q9UHM6 478 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 RABL2BQ9UNT1 228 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 LINC00312Q9Y6C7 94 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 HIVEP2P31629 2446 aa12.58□□□□□ -0.4
LSM1-203ENST00000520755 FUOMA2VDF0 154 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 C12orf77C9JDV5 145 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 C15orf65H3BRN8 121 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 GABARAPH6UMI1 98 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 SULT1C2O00338 296 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 GSTZ1O43708 216 aaPredicted RBP12.57□□□□□ -0.4
LSM1-203ENST00000520755 LANCL1O43813 399 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 TOX4O94842 621 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 FCER2P06734 321 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 MRPS10P82664 201 aaKnown RBP12.57□□□□□ -0.4
LSM1-203ENST00000520755 PITPNAQ00169 270 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 ZNF45Q02386 682 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 C17orf58Q2M2W7 97 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 PYDC2Q56P42 97 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 MOB1BQ7L9L4 216 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 UBALD1Q8TB05 177 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 SETD6Q8TBK2 473 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 OCSTAMPQ9BR26 566 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 BEX2Q9BXY8 128 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 RIMS4Q9H426 269 aaPredicted RBP12.57□□□□□ -0.4
LSM1-203ENST00000520755 CDC42EP3Q9UKI2 254 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 RBMX2Q9Y388 322 aaKnown RBP12.57□□□□□ -0.4
LSM1-203ENST00000520755 SVEP1Q4LDE5 3571 aa12.57□□□□□ -0.4
LSM1-203ENST00000520755 SONP18583 2426 aaKnown RBP12.56□□□□□ -0.4
LSM1-203ENST00000520755 A0A1W2PPH5 198 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 hADV38S2A0JD32 116 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 SRP14P37108 136 aaKnown RBP12.56□□□□□ -0.4
LSM1-203ENST00000520755 GDNFP39905 211 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 HLA-DRB3P79483 266 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 HERPUD1Q15011 391 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 CHRFAM7AQ494W8 412 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 OR52W1Q6IF63 320 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 Q6ZS49 121 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 HOGA1Q86XE5 327 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 C11orf42Q8N5U0 333 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 KIR3DL3Q8N743 410 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 C15orf40Q8WUR7 153 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 S100ZQ8WXG8 99 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 SIRPDQ9H106 197 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 CALYQ9NYX4 217 aa12.56□□□□□ -0.4
LSM1-203ENST00000520755 OR6C3Q9NZP0 311 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms