RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 FSTL3O95633 263 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 GLAP06280 429 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 CD2P06729 351 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 DBHP09172 617 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 SPARCP09486 303 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 ZNF823P16415 610 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 SELEP16581 610 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 TBPP20226 339 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 BDKRB2P30411 391 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 CEACAM6P40199 344 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 SLC6A9P48067 706 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 KCNJ3P48549 501 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 CX3CR1P49238 355 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 RBP2P50120 134 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 H2BFSP57053 126 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 TAS2R19P59542 299 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 SNRPEP62304 92 aaKnown RBP6.74□□□□□ -1.33
SCN1A-207ENST00000507401 SSX2Q16385 188 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 KRTAP24-1Q3LI83 254 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 TMEM155Q4W5P6 130 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 SLC35D3Q5M8T2 416 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 Q6ZR03 302 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 REC114Q7Z4M0 266 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 BAP18Q8IXM2 172 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 ZFP41Q8N8Y5 198 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 OR2Z1Q8NG97 314 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 OR52E2Q8NGJ4 325 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 OR51G2Q8NGK0 314 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 OR2AJ1Q8NGZ0 328 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 LGALS14Q8TCE9 139 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 GHSRQ92847 366 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 FANCD2OSQ96PS1 177 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 CMSS1Q9BQ75 279 aaKnown RBP6.74□□□□□ -1.33
SCN1A-207ENST00000507401 C2orf88Q9BSF0 95 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 C1QTNF5Q9BXJ0 243 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 POFUT1Q9H488 388 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 TMEM106BQ9NUM4 274 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 SLC2A8Q9NY64 477 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 RCC2Q9P258 522 aaKnown RBP6.74□□□□□ -1.33
SCN1A-207ENST00000507401 DNAJB11Q9UBS4 358 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 FOXJ3Q9UPW0 622 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 PPP1R3CQ9UQK1 317 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 POLR1DQ9Y2S0 133 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 POLR3KQ9Y2Y1 108 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-207ENST00000507401 V9GY05 133 aa6.74□□□□□ -1.33
SCN1A-207ENST00000507401 TANC2Q9HCD6 1990 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 IQCF6A8MYZ5 107 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 F5H0A9 414 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-207ENST00000507401 FOXH1O75593 365 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 GPANK1O95872 356 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 HLA-DQA2P01906 255 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 SRMP19623 302 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 PRKXP51817 358 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 LUMP51884 338 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-207ENST00000507401 RIDAP52758 137 aaKnown RBP6.73□□□□□ -1.33
SCN1A-207ENST00000507401 SLC25A1P53007 311 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 F2RL1P55085 397 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 TAS2R31P59538 309 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 PKIAP61925 76 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 ID3Q02535 119 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 MALLQ13021 153 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 MEP1BQ16820 701 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 PCK2Q16822 640 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 C4orf46Q504U0 113 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 SPRNQ5BIV9 151 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 OR2B11Q5JQS5 317 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 BCDIN3DQ7Z5W3 292 aaKnown RBP6.73□□□□□ -1.33
SCN1A-207ENST00000507401 CPOQ8IVL8 374 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 MUC20Q8N307 709 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-207ENST00000507401 ZDHHC22Q8N966 263 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 ZNF565Q8N9K5 539 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 TMEM229BQ8NBD8 167 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 OR10H4Q8NGA5 316 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 OR13D1Q8NGV5 346 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 GPR148Q8TDV2 347 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 ST7LQ8TDW4 575 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 NUDCD2Q8WVJ2 157 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 ERGIC1Q969X5 290 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 SMIM8Q96KF7 97 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 TMEM68Q96MH6 324 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 OR2V2Q96R30 315 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 PRRT1Q99946 306 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 NRIP2Q9BQI9 281 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 C19orf24Q9BVV8 132 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 HCAR1Q9BXC0 346 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 PLA2G12AQ9BZM1 189 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 EGLN3Q9H6Z9 239 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 PATZ1Q9HBE1 687 aaKnown RBP6.73□□□□□ -1.33
SCN1A-207ENST00000507401 LPAR2Q9HBW0 351 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 GCM1Q9NP62 436 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 TREM1Q9NP99 234 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 PNRC2Q9NPJ4 139 aaKnown RBP6.73□□□□□ -1.33
SCN1A-207ENST00000507401 MRPL22Q9NWU5 206 aaKnown RBP6.73□□□□□ -1.33
SCN1A-207ENST00000507401 KCNIP3Q9Y2W7 256 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 ZNF281Q9Y2X9 895 aa6.73□□□□□ -1.33
SCN1A-207ENST00000507401 A0A0B4J2A0 478 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 F5H5K5 113 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 TMEM178BH3BS89 294 aa6.72□□□□□ -1.33
SCN1A-207ENST00000507401 CRTAPO75718 401 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-207ENST00000507401 CD74P04233 296 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms