RNA–Protein interactions for RNA: ENST00000498548.1

NR1H3-227, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

TSL 3

Gene NR1H3, Length 559 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-227ENST00000498548 CREB3L1Q96BA8 519 aa12.87□□□□□ -0.35
NR1H3-227ENST00000498548 RBM14Q96PK6 669 aaKnown RBP12.87□□□□□ -0.35
NR1H3-227ENST00000498548 CITED2Q99967 270 aaPredicted RBP12.87□□□□□ -0.35
NR1H3-227ENST00000498548 TMED9Q9BVK6 235 aa12.87□□□□□ -0.35
NR1H3-227ENST00000498548 SELENOIQ9C0D9 397 aa12.87□□□□□ -0.35
NR1H3-227ENST00000498548 WNT10AQ9GZT5 417 aa12.87□□□□□ -0.35
NR1H3-227ENST00000498548 LINC00574Q9H8X3 128 aa12.87□□□□□ -0.35
NR1H3-227ENST00000498548 C15orf65H3BRN8 121 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 H3BUI4 141 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 CRTAPO75718 401 aaPredicted RBP12.86□□□□□ -0.35
NR1H3-227ENST00000498548 ATP6V1G2O95670 118 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 MT-ND4P03905 459 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 LPLP06858 475 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 MNDAP41218 407 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 ARHGDIBP52566 201 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 PAX5Q02548 391 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 C9orf152Q5JTZ5 239 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 UNQ9370/PRO34162Q6UXP9 181 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 C5orf24Q7Z6I8 188 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 TMEM104Q8NE00 496 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 OR4K15Q8NH41 348 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 WIPF2Q8TF74 440 aaPredicted RBP12.86□□□□□ -0.35
NR1H3-227ENST00000498548 MND1Q9BWT6 205 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 LIN7BQ9HAP6 207 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 SCN3BQ9NY72 215 aa12.86□□□□□ -0.35
NR1H3-227ENST00000498548 AMMECR1Q9Y4X0 333 aaPredicted RBP12.86□□□□□ -0.35
NR1H3-227ENST00000498548 UBE2QL1A1L167 161 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 MCRIP1C9JLW8 97 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 AIPO00170 330 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 OR2F2O95006 317 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 AMY1AP04745 511 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 AMY2AP04746 511 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 SNRNP70P08621 437 aaKnown RBP12.85□□□□□ -0.35
NR1H3-227ENST00000498548 MGMTP16455 207 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 GZMHP20718 246 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 MED22Q15528 200 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 PDLIM3Q53GG5 364 aaPredicted RBP12.85□□□□□ -0.35
NR1H3-227ENST00000498548 RAB12Q6IQ22 244 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 CCDC144NLQ6NUI1 221 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 ZNF497Q6ZNH5 498 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 C16orf82Q7Z2V1 217 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 DRAM1Q8N682 238 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 OR10A7Q8NGE5 316 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 OR56B4Q8NH76 319 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 MYDGFQ969H8 173 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 FAM46BQ96A09 425 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 ETAA1Q9NY74 926 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 LSM2Q9Y333 95 aaKnown RBP12.85□□□□□ -0.35
NR1H3-227ENST00000498548 PEX16Q9Y5Y5 336 aa12.85□□□□□ -0.35
NR1H3-227ENST00000498548 A0A1W2PPI3 338 aa12.84□□□□□ -0.35
NR1H3-227ENST00000498548 A0A1W2PRX2 142 aa12.84□□□□□ -0.35
NR1H3-227ENST00000498548 OOSP1A8MZH6 123 aa12.84□□□□□ -0.35
NR1H3-227ENST00000498548 SDCBPO00560 298 aaPredicted RBP12.84□□□□□ -0.35
NR1H3-227ENST00000498548 PLXNB1O43157 2135 aa12.84□□□□□ -0.35
NR1H3-227ENST00000498548 REG1BP48304 166 aa12.84□□□□□ -0.35
NR1H3-227ENST00000498548 HES1Q14469 280 aa12.84□□□□□ -0.35
NR1H3-227ENST00000498548 HNF4GQ14541 408 aa12.84□□□□□ -0.35
NR1H3-227ENST00000498548 SPHARQ15513 63 aa12.84□□□□□ -0.35
NR1H3-227ENST00000498548 SYT6Q5T7P8 510 aaPredicted RBP12.84□□□□□ -0.35
NR1H3-227ENST00000498548 RNLSQ5VYX0 342 aa12.84□□□□□ -0.35
NR1H3-227ENST00000498548 OR10K2Q6IF99 312 aa12.84□□□□□ -0.35
NR1H3-227ENST00000498548 CENPVQ7Z7K6 275 aaPredicted RBP12.84□□□□□ -0.35
NR1H3-227ENST00000498548 CDH26Q8IXH8 852 aa12.84□□□□□ -0.35
NR1H3-227ENST00000498548 OR5AU1Q8NGC0 362 aa12.84□□□□□ -0.35
NR1H3-227ENST00000498548 OR10X1Q8NGY0 326 aa12.84□□□□□ -0.35
NR1H3-227ENST00000498548 RBMXL1Q96E39 390 aaKnown RBP12.84□□□□□ -0.35
NR1H3-227ENST00000498548 RCC2Q9P258 522 aaKnown RBP12.84□□□□□ -0.35
NR1H3-227ENST00000498548 TRAPPC2LQ9UL33 140 aa12.84□□□□□ -0.35
NR1H3-227ENST00000498548 VWFP04275 2813 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 IGHV3-72A0A0B4J1Y9 119 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 FAM90A18PA6NE21 464 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 FAM90A16PA6NEW6 464 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 FAM90A20PA6NIJ5 464 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 FAM90A9PA6NNJ1 464 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 ADARB2-AS1A8MUL3 147 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 FAM90A12PA8MX19 464 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 FAM90A5PA8MXJ8 464 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 G3V4G9 280 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 SLC31A2O15432 143 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 FAM90A15PP0C7V4 464 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 FAM90A13PP0C7W8 464 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 FAM90A14PP0C7W9 464 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 FAM90A24PP0C7X0 464 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 FAM106CPP0CH98 169 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 MAPK3P27361 379 aaPredicted RBP12.83□□□□□ -0.36
NR1H3-227ENST00000498548 SLC35A2P78381 396 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 MADCAM1Q13477 382 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 IRF3Q14653 427 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 SIGIRRQ6IA17 410 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 C10orf99Q6UWK7 81 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 CEACAM19Q7Z692 300 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 LRRTM1Q86UE6 522 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 PRR18Q8N4B5 295 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 TMEM203Q969S6 136 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 MRPS24Q96EL2 167 aaKnown RBP12.83□□□□□ -0.36
NR1H3-227ENST00000498548 AKR1E2Q96JD6 320 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 Q96M66 194 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 KCNK15Q9H427 330 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 GFOD1Q9NXC2 390 aa12.83□□□□□ -0.36
NR1H3-227ENST00000498548 C12orf77C9JDV5 145 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms