RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 OR2H2O95918 312 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 HAND1O96004 215 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 HLA-DQB1P01920 261 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 CD3GP09693 182 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 PSG2P11465 335 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 FUT3P21217 361 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 CPT2P23786 658 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 MPZP25189 248 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 SSTR2P30874 369 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 PRSS3P35030 304 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 EFNA4P52798 201 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 ATP5J2P56134 94 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 TMEM50BP56557 158 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 RBM11P57052 281 aaKnown RBP3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 GNG2P59768 71 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 ERVK11-1P61568 191 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 SSBP2P81877 361 aaPredicted RBP3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 MRPS15P82914 257 aaKnown RBP3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 ZNF45Q02386 682 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 FAM189A2Q15884 450 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 MICBQ29980 383 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 SMIM21Q3B7S5 101 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 ZNF260Q3ZCT1 412 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 PAN3Q58A45 887 aaKnown RBP3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 ZNF626Q68DY1 528 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 ZNF57Q68EA5 555 aaPredicted RBP3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 ELP2Q6IA86 826 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 RAB12Q6IQ22 244 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 PYHIN1Q6K0P9 492 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 Q6P435 159 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 C16orf87Q6PH81 154 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 LYPD2Q6UXB3 125 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 C5orf24Q7Z6I8 188 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 TRAPPC6BQ86SZ2 158 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 CCDC190Q86UF4 302 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 Q8IYB0 196 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 C1orf87Q8N0U7 546 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 CD177Q8N6Q3 437 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 ASCC1Q8N9N2 400 aaKnown RBP3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 SUMF2Q8NBJ7 301 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 TMEM185AQ8NFB2 350 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 OR52I2Q8NH67 350 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 CCDC107Q8WV48 283 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 FCAMRQ8WWV6 532 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 MAFIPQ8WZ33 124 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 PTX4Q96A99 478 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 MRPS24Q96EL2 167 aaKnown RBP3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 PERPQ96FX8 193 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 WDFY2Q96P53 400 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 ABHD1Q96SE0 405 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 CMSS1Q9BQ75 279 aaKnown RBP3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 NRIP2Q9BQI9 281 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 SULT4A1Q9BR01 284 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 HDHD3Q9BSH5 251 aaPredicted RBP3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 ST6GALNAC5Q9BVH7 336 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 TM2D1Q9BX74 207 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 CHST6Q9GZX3 395 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 TLNRD1Q9H1K6 362 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 AUNIPQ9H7T9 357 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 CHODLQ9H9P2 273 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 MYOZ1Q9NP98 299 aaPredicted RBP3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 RASL12Q9NYN1 266 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 IL36GQ9NZH8 169 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 ZNF230Q9UIE0 474 aaPredicted RBP3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 AK3Q9UIJ7 227 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 FBXO9Q9UK97 447 aaPredicted RBP3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 NPTNQ9Y639 398 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 SPTBN1Q01082 2364 aaKnown RBP3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 KALRNO60229 2985 aa3.39□□□□□ -1.87
TMEM39A-204ENST00000468545 IGKV1D-17A0A075B6S4 117 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 TRAV24A0A0B4J272 114 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 A0A1B0GW55 424 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 NKX6-3A6NJ46 265 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 NPIPB5A8MRT5 1133 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 H7C417 338 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 SLC33A1O00400 549 aaPredicted RBP3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 NDUFB3O43676 98 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 LANCL1O43813 399 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 NOS1APO75052 506 aaPredicted RBP3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 PDCD6O75340 191 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 RBBP9O75884 186 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 SCGNO76038 276 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 LHBP01229 141 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 IGHV4-39P01824 125 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 CSN2P05814 226 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 ACAA1P09110 424 aaPredicted RBP3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 CSF1P09603 554 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 DUX4L2P0CJ85 424 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 DUX4L3P0CJ86 424 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 DUX4L4P0CJ87 422 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 DUX4L5P0CJ88 424 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 DUX4L6P0CJ89 424 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 DUX4L7P0CJ90 424 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 SELLP14151 372 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 HIST1H1DP16402 221 aaKnown RBP3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 DNASE1P24855 282 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 HLA-DMAP28067 261 aa3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 GPR6P46095 362 aaPredicted RBP3.38□□□□□ -1.87
TMEM39A-204ENST00000468545 PDLIM4P50479 330 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 368.5 ms