RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 SIRPDQ9H106 197 aa12.49□□□□□ -0.41
NPHP4-205ENST00000466897 ZMAT3Q9HA38 289 aaKnown RBP12.49□□□□□ -0.41
NPHP4-205ENST00000466897 RAB9BQ9NP90 201 aa12.49□□□□□ -0.41
NPHP4-205ENST00000466897 PTTG2Q9NZH5 202 aa12.49□□□□□ -0.41
NPHP4-205ENST00000466897 EXTL2Q9UBQ6 330 aa12.49□□□□□ -0.41
NPHP4-205ENST00000466897 TRAPPC2LQ9UL33 140 aa12.49□□□□□ -0.41
NPHP4-205ENST00000466897 KCNS2Q9ULS6 477 aa12.49□□□□□ -0.41
NPHP4-205ENST00000466897 KBTBD11-OT1A0A1B0GTJ5 212 aa12.48□□□□□ -0.41
NPHP4-205ENST00000466897 NPIPB11E5RHQ5 1161 aa12.48□□□□□ -0.41
NPHP4-205ENST00000466897 HLA-DQB1P01920 261 aa12.48□□□□□ -0.41
NPHP4-205ENST00000466897 GLP1RP43220 463 aa12.48□□□□□ -0.41
NPHP4-205ENST00000466897 ARFRP1Q13795 201 aa12.48□□□□□ -0.41
NPHP4-205ENST00000466897 TMEM30BQ3MIR4 351 aa12.48□□□□□ -0.41
NPHP4-205ENST00000466897 METTL11BQ5VVY1 283 aa12.48□□□□□ -0.41
NPHP4-205ENST00000466897 CNIH2Q6PI25 160 aa12.48□□□□□ -0.41
NPHP4-205ENST00000466897 HEPN1Q6WQI6 88 aa12.48□□□□□ -0.41
NPHP4-205ENST00000466897 TRAPPC6BQ86SZ2 158 aa12.48□□□□□ -0.41
NPHP4-205ENST00000466897 TEX29Q8N6K0 151 aa12.48□□□□□ -0.41
NPHP4-205ENST00000466897 TMPRSS13Q9BYE2 586 aa12.48□□□□□ -0.41
NPHP4-205ENST00000466897 METTL8Q9H825 291 aaKnown RBP12.48□□□□□ -0.41
NPHP4-205ENST00000466897 ING3Q9NXR8 418 aa12.48□□□□□ -0.41
NPHP4-205ENST00000466897 C15orf65H3BRN8 121 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 DIRAS3O95661 229 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 FCGR3AP08637 254 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 CCL3L1P16619 93 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 PRTN3P24158 256 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 TNFSF8P32971 234 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 CBX5P45973 191 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 GNG2P59768 71 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 ARF6P62330 175 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 HMGN3Q15651 99 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 C17orf58Q2M2W7 97 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 Q6ZPA2 131 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 Q8N7P7 452 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 OR6Q1Q8NGQ2 317 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 OR4K15Q8NH41 348 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 MRGPRDQ8TDS7 321 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 UPRTQ96BW1 309 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 DIRAS2Q96HU8 199 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 SOSTQ9BQB4 213 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 HDHD3Q9BSH5 251 aaPredicted RBP12.47□□□□□ -0.41
NPHP4-205ENST00000466897 C7orf69Q9H7B7 122 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 SCPEP1Q9HB40 452 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 CHMP1AQ9HD42 196 aaPredicted RBP12.47□□□□□ -0.41
NPHP4-205ENST00000466897 Q9N2K0 584 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 CALYQ9NYX4 217 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 ONECUT1Q9UBC0 465 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 AUP1Q9Y679 476 aa12.47□□□□□ -0.41
NPHP4-205ENST00000466897 A8MV72 311 aaPredicted RBP12.46□□□□□ -0.41
NPHP4-205ENST00000466897 SULT1C2O00338 296 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 CTDSPLO15194 276 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 SSX5O60225 188 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 TOX4O94842 621 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 LY6G6DO95868 133 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 RCC1P18754 421 aaPredicted RBP12.46□□□□□ -0.41
NPHP4-205ENST00000466897 PTBP1P26599 531 aaKnown RBP eCLIP12.46□□□□□ -0.41
NPHP4-205ENST00000466897 ETV6P41212 452 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 ERVFRD-1P60508 538 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 MRPS10P82664 201 aaKnown RBP12.46□□□□□ -0.41
NPHP4-205ENST00000466897 PYHIN1Q6K0P9 492 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 FAHD2BQ6P2I3 314 aaPredicted RBP12.46□□□□□ -0.41
NPHP4-205ENST00000466897 CCDC190Q86UF4 302 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 IZUMO1Q8IYV9 350 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 CCDC107Q8WV48 283 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 NUDCD2Q8WVJ2 157 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 FAHD2AQ96GK7 314 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 OCSTAMPQ9BR26 566 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 KCNIP1Q9NZI2 227 aa12.46□□□□□ -0.41
NPHP4-205ENST00000466897 ELF5Q9UKW6 265 aaPredicted RBP12.46□□□□□ -0.41
NPHP4-205ENST00000466897 A0A087X0M5 115 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 A0A1B0GX30 115 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 C12orf77C9JDV5 145 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 F2RL2O00254 374 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 SPINT2O43291 252 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 LPLP06858 475 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 IGHV1-8P0DP01 117 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 PRSS3P35030 304 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 SSTR5P35346 364 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 KIR2DS4P43632 304 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 HLA-DRB3P79483 266 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 KIR2DS1Q14954 304 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 NCR3LG1Q68D85 454 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 OR52W1Q6IF63 320 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 CLEC9AQ6UXN8 241 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 VMO1Q7Z5L0 202 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 OR52M1Q8NGK5 317 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 TBX15Q96SF7 602 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 TAF9BQ9HBM6 251 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 ANAPC10Q9UM13 185 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 SESN1Q9Y6P5 492 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 F8P00451 2351 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 CSPG4Q6UVK1 2322 aa12.45□□□□□ -0.42
NPHP4-205ENST00000466897 FPR2P25090 351 aa12.44□□□□□ -0.42
NPHP4-205ENST00000466897 CD34P28906 385 aa12.44□□□□□ -0.42
NPHP4-205ENST00000466897 HTD2P86397 168 aa12.44□□□□□ -0.42
NPHP4-205ENST00000466897 Q3ZCU0 254 aa12.44□□□□□ -0.42
NPHP4-205ENST00000466897 GPX8Q8TED1 209 aa12.44□□□□□ -0.42
NPHP4-205ENST00000466897 TNFRSF14Q92956 283 aa12.44□□□□□ -0.42
NPHP4-205ENST00000466897 ARL11Q969Q4 196 aa12.44□□□□□ -0.42
NPHP4-205ENST00000466897 KIRREL1Q96J84 757 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms