RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ZNF16P17020 682 aaPredicted RBP12.99□□□□□ -0.33
USP40-206ENST00000443711 DTYMKP23919 212 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 CBX5P45973 191 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 ARF6P62330 175 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 PAX8Q06710 450 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 MADCAM1Q13477 382 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 IL18Q14116 193 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 PYHIN1Q6K0P9 492 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 ZNF880Q6PDB4 577 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 LINC00299Q6ZSB3 139 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 C1orf122Q6ZSJ8 110 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 TCF23Q7RTU1 214 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 ZNF554Q86TJ5 538 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 CCDC190Q86UF4 302 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 SNX29P2Q8IUI4 249 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 NUDCD2Q8WVJ2 157 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 Q9N2K0 584 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 RAB9BQ9NP90 201 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 MBNL3Q9NUK0 354 aaKnown RBP12.99□□□□□ -0.33
USP40-206ENST00000443711 KPTNQ9Y664 436 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 CSPG4Q6UVK1 2322 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 KBTBD11-OT1A0A1B0GTJ5 212 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 C17orf98A8MV24 154 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 J3QLI3 93 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 SSX5O60225 188 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 FCGR3AP08637 254 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 PTHLHP12272 177 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 CCL3L1P16619 93 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 RCC1P18754 421 aaPredicted RBP12.98□□□□□ -0.33
USP40-206ENST00000443711 DLX6P56179 175 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 SPANXN2Q5MJ10 180 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 METTL11BQ5VVY1 283 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 FAHD2BQ6P2I3 314 aaPredicted RBP12.98□□□□□ -0.33
USP40-206ENST00000443711 FAM131AQ6UXB0 335 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 ARL11Q969Q4 196 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 FAHD2AQ96GK7 314 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 SOSTQ9BQB4 213 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 SCPEP1Q9HB40 452 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 CALYQ9NYX4 217 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 VPS13CQ709C8 3753 aa12.98□□□□□ -0.33
USP40-206ENST00000443711 ZANQ9Y493 2812 aa12.97□□□□□ -0.33
USP40-206ENST00000443711 SULT1C2O00338 296 aa12.97□□□□□ -0.33
USP40-206ENST00000443711 SPINT2O43291 252 aa12.97□□□□□ -0.33
USP40-206ENST00000443711 RBP4P02753 201 aa12.97□□□□□ -0.33
USP40-206ENST00000443711 PTBP1P26599 531 aaKnown RBP eCLIP12.97□□□□□ -0.33
USP40-206ENST00000443711 MRPS10P82664 201 aaKnown RBP12.97□□□□□ -0.33
USP40-206ENST00000443711 KRTAP1-1Q07627 177 aa12.97□□□□□ -0.33
USP40-206ENST00000443711 SRSF7Q16629 238 aaKnown RBP eCLIP12.97□□□□□ -0.33
USP40-206ENST00000443711 ABHD1Q96SE0 405 aa12.97□□□□□ -0.33
USP40-206ENST00000443711 OCSTAMPQ9BR26 566 aa12.97□□□□□ -0.33
USP40-206ENST00000443711 ST6GALNAC5Q9BVH7 336 aa12.97□□□□□ -0.33
USP40-206ENST00000443711 SIRPDQ9H106 197 aa12.97□□□□□ -0.33
USP40-206ENST00000443711 C7orf69Q9H7B7 122 aa12.97□□□□□ -0.33
USP40-206ENST00000443711 LINC00574Q9H8X3 128 aa12.97□□□□□ -0.33
USP40-206ENST00000443711 TAF9BQ9HBM6 251 aa12.97□□□□□ -0.33
USP40-206ENST00000443711 KCNS2Q9ULS6 477 aa12.97□□□□□ -0.33
USP40-206ENST00000443711 AUP1Q9Y679 476 aa12.97□□□□□ -0.33
USP40-206ENST00000443711 TRDCB7Z8K6 153 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 C12orf77C9JDV5 145 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 CTDSPLO15194 276 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 TOX4O94842 621 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 LPLP06858 475 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 ETV6P41212 452 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 GUCA2AQ02747 115 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 C17orf58Q2M2W7 97 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 HEPN1Q6WQI6 88 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 Q6ZPA2 131 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 Q6ZS49 121 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 C11orf42Q8N5U0 333 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 Q8N7P7 452 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 OR10A7Q8NGE5 316 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 RFESDQ8TAC1 157 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 GPX8Q8TED1 209 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 METTL8Q9H825 291 aaKnown RBP12.96□□□□□ -0.33
USP40-206ENST00000443711 ZNF286AQ9HBT8 521 aa12.96□□□□□ -0.33
USP40-206ENST00000443711 ZNF230Q9UIE0 474 aaPredicted RBP12.96□□□□□ -0.33
USP40-206ENST00000443711 MEIOCA2RUB1 952 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 NPIPB11E5RHQ5 1161 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 C15orf65H3BRN8 121 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 HBZP02008 142 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 PRTN3P24158 256 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 SSTR5P35346 364 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 KIR2DS4P43632 304 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 ERVFRD-1P60508 538 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 HLA-DRB3P79483 266 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 KIR2DS1Q14954 304 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 HMGN3Q15651 99 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 OR52W1Q6IF63 320 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 HOGA1Q86XE5 327 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 FCAMRQ8WWV6 532 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 MAFIPQ8WZ33 124 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 GCDHQ92947 438 aaPredicted RBP12.95□□□□□ -0.34
USP40-206ENST00000443711 PCGF1Q9BSM1 259 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 TMPRSS13Q9BYE2 586 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 UNKLQ9H9P5 680 aaKnown RBP12.95□□□□□ -0.34
USP40-206ENST00000443711 IFT46Q9NQC8 304 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 YAE1D1Q9NRH1 226 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 IDI2-AS1Q9NZ38 188 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 V9GYH0 126 aa12.95□□□□□ -0.34
USP40-206ENST00000443711 TLN2Q9Y4G6 2542 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms