RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 TAAR5O14804 337 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 CHST10O43529 356 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 EIF1BO60739 113 aaKnown RBP2.33□□□□□ -2.04
USP40-204ENST00000427947 IFNA5P01569 189 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 TYMSP04818 313 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 ZNF806P0C7X5 589 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 AKR1C4P17516 323 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 S100A5P33763 92 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 PRSS3P35030 304 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 EIF1P41567 113 aaKnown RBP2.33□□□□□ -2.04
USP40-204ENST00000427947 KIR3DL2P43630 455 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 LGALS7P47929 136 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 ERFP50548 548 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 SLC18A1P54219 525 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 GFERP55789 205 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 PPP1CAP62136 330 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 BAXQ07812 192 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 SMAGPQ0VAQ4 97 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 MLLT11Q13015 90 aaPredicted RBP2.33□□□□□ -2.04
USP40-204ENST00000427947 TBC1D28Q2M2D7 210 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 HLA-DRB5Q30154 266 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 LAMTOR1Q6IAA8 161 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 TTC33Q6PID6 262 aaPredicted RBP2.33□□□□□ -2.04
USP40-204ENST00000427947 TMEM205Q6UW68 189 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 DGAT2L6Q6ZPD8 337 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 NTM-AS1Q6ZSK4 140 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 FAM183BPQ6ZVS7 135 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 WDR86Q86TI4 376 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 Q8N402 240 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 RIBC1Q8N443 379 aaPredicted RBP2.33□□□□□ -2.04
USP40-204ENST00000427947 RNF182Q8N6D2 247 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 GATD1Q8NB37 220 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 ZNF461Q8TAF7 563 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 SMIM12Q96EX1 92 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 CCDC42Q96M95 316 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 LINC01587Q99440 93 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 ANAPC13Q9BS18 74 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 SAMD10Q9BYL1 202 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 POMKQ9H5K3 350 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 DMAC2Q9NW81 257 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 LRRC42Q9Y546 428 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 INSIG2Q9Y5U4 225 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 SNX10Q9Y5X0 201 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 MTCH2Q9Y6C9 303 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 NIPBLQ6KC79 2804 aaeCLIP2.33□□□□□ -2.04
USP40-204ENST00000427947 RAB3GAP2Q9H2M9 1393 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 TOP2AP11388 1531 aaKnown RBP2.32□□□□□ -2.04
USP40-204ENST00000427947 HMCN2Q8NDA2 5059 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 IGHV6-1A0A0B4J1U7 121 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 TRAV8-2A0A0B4J237 113 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 LOC389332A0A1B0GUA5 103 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 TINCRA0A1B0GVN0 87 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 METTL15A6NJ78 407 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 CEACAM18A8MTB9 384 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 TRAPPC3O43617 180 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 UGT2B11O75310 529 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 GATBO75879 557 aaKnown RBP2.32□□□□□ -2.04
USP40-204ENST00000427947 OR2A4O95047 310 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 SOX14O95416 240 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 CALB1P05937 261 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 OR56A5P0C7T3 313 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 RPS12P25398 132 aaKnown RBP2.32□□□□□ -2.04
USP40-204ENST00000427947 CBX5P45973 191 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 NKX2-5P52952 324 aaPredicted RBP2.32□□□□□ -2.04
USP40-204ENST00000427947 AP2S1P53680 142 aaPredicted RBP2.32□□□□□ -2.04
USP40-204ENST00000427947 REEP5Q00765 189 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 LOXL1Q08397 574 aaPredicted RBP2.32□□□□□ -2.04
USP40-204ENST00000427947 ATP6AP1LQ52LC2 224 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 UBE2NLQ5JXB2 153 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 ZNF684Q5T5D7 378 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 LPCAT4Q643R3 524 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 C8orf74Q6P047 294 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 ZNF880Q6PDB4 577 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 DNM1P34Q6PK57 102 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 ZNF773Q6PK81 442 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 KRTAP5-5Q701N2 237 aaPredicted RBP2.32□□□□□ -2.04
USP40-204ENST00000427947 ACBD4Q8NC06 268 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 SLC26A10Q8NG04 563 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 ENKURQ8TC29 256 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 C15orf40Q8WUR7 153 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 TWIST2Q8WVJ9 160 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 TESCQ96BS2 214 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 SMIM19Q96E16 107 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 NEURL3Q96EH8 262 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 MRPL48Q96GC5 212 aaKnown RBP2.32□□□□□ -2.04
USP40-204ENST00000427947 OR10C1Q96KK4 312 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 BIRC8Q96P09 236 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 OR2A7Q96R45 310 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 SUCNR1Q9BXA5 334 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 CDCA4Q9BXL8 241 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 TBL1XR1Q9BZK7 514 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 ULBP1Q9BZM6 244 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 OR51V1Q9H2C8 321 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 OR52D1Q9H346 318 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 FBXO6Q9NRD1 293 aaPredicted RBP2.32□□□□□ -2.04
USP40-204ENST00000427947 DDX19AQ9NUU7 478 aaKnown RBP2.32□□□□□ -2.04
USP40-204ENST00000427947 IL20Q9NYY1 176 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 GUCA1BQ9UMX6 200 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 RFNGQ9Y644 331 aa2.32□□□□□ -2.04
USP40-204ENST00000427947 ZNF780BQ9Y6R6 833 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms