RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 GPHA2Q96T91 129 aa17.01■□□□□ 0.31
USP39-204ENST00000409766 UBE2J1Q9Y385 318 aaPredicted RBP17.01■□□□□ 0.31
USP39-204ENST00000409766 A0A1B0GWJ7 208 aa17■□□□□ 0.31
USP39-204ENST00000409766 FGF16O43320 207 aa17■□□□□ 0.31
USP39-204ENST00000409766 GCH1P30793 250 aa17■□□□□ 0.31
USP39-204ENST00000409766 KRTCAP3Q53RY4 240 aa17■□□□□ 0.31
USP39-204ENST00000409766 CMTM1Q8IZ96 169 aa17■□□□□ 0.31
USP39-204ENST00000409766 PLEKHA2Q9HB19 425 aa17■□□□□ 0.31
USP39-204ENST00000409766 DCHS1Q96JQ0 3298 aa17■□□□□ 0.31
USP39-204ENST00000409766 TRAV39A0A0B4J263 110 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 E5RGE8 158 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 CDS2O95674 445 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 HAND1O96004 215 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 TIMM23BQ5SRD1 257 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 FIP1L1Q6UN15 594 aaKnown RBP16.99■□□□□ 0.31
USP39-204ENST00000409766 SPERTQ8NA61 448 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 TMED6Q8WW62 240 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 MSL2Q9HCI7 577 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 ZC4H2Q9NQZ6 224 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 ZFP57Q9NU63 452 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 MBNL3Q9NUK0 354 aaKnown RBP16.99■□□□□ 0.31
USP39-204ENST00000409766 ERRFI1Q9UJM3 462 aaPredicted RBP16.99■□□□□ 0.31
USP39-204ENST00000409766 TRAPPC2LQ9UL33 140 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 SSUH2Q9Y2M2 353 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 NSG2Q9Y328 171 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 WIPI2Q9Y4P8 454 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 MKRN2OSH3BPM6 223 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 WNT9BO14905 357 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 PGLYRP1O75594 196 aaPredicted RBP16.99■□□□□ 0.31
USP39-204ENST00000409766 LMO1P25800 156 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 UCP1P25874 307 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 SELENOHQ8IZQ5 122 aaKnown RBP16.99■□□□□ 0.31
USP39-204ENST00000409766 OR4D5Q8NGN0 318 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 LILRB1Q8NHL6 650 aaPredicted RBP16.99■□□□□ 0.31
USP39-204ENST00000409766 IL1F10Q8WWZ1 152 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 S100PBPQ96BU1 408 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 OR2S2Q9NQN1 319 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 TAAR3PQ9P1P4 343 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 OR1A1Q9P1Q5 309 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 ATMQ13315 3056 aa16.99■□□□□ 0.31
USP39-204ENST00000409766 DMXL2Q8TDJ6 3036 aa16.98■□□□□ 0.31
USP39-204ENST00000409766 LGALS8O00214 317 aa16.98■□□□□ 0.31
USP39-204ENST00000409766 PRAMEF6Q5VXH4 476 aa16.98■□□□□ 0.31
USP39-204ENST00000409766 RPL7L1Q6DKI1 246 aaKnown RBP16.98■□□□□ 0.31
USP39-204ENST00000409766 WDR82Q6UXN9 313 aa16.98■□□□□ 0.31
USP39-204ENST00000409766 ZNF695Q8IW36 515 aa16.98■□□□□ 0.31
USP39-204ENST00000409766 GALNT11Q8NCW6 608 aa16.98■□□□□ 0.31
USP39-204ENST00000409766 FAM57AQ8TBR7 257 aa16.98■□□□□ 0.31
USP39-204ENST00000409766 NARFLQ9H6Q4 476 aa16.98■□□□□ 0.31
USP39-204ENST00000409766 OR14J1Q9UGF5 321 aa16.98■□□□□ 0.31
USP39-204ENST00000409766 BSNQ9UPA5 3926 aa16.98■□□□□ 0.31
USP39-204ENST00000409766 NKX2-6A6NCS4 301 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 KRBOX1C9JBD0 128 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.97■□□□□ 0.31
USP39-204ENST00000409766 ST8SIA3O43173 380 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 PSPNO60542 156 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 CRYZL1O95825 349 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 CEACAM8P31997 349 aaPredicted RBP16.97■□□□□ 0.31
USP39-204ENST00000409766 CEBPDP49716 269 aaPredicted RBP16.97■□□□□ 0.31
USP39-204ENST00000409766 TMEM33P57088 247 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 A6NLC8 198 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 H0Y980 276 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 FAM157CP0CG43 387 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 ZNF83P51522 516 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 FOXC1Q12948 553 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 TESK1Q15569 626 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 ACP7Q6ZNF0 438 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 RNF141Q8WVD5 230 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 ABHD17AQ96GS6 310 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 SFXN3Q9BWM7 321 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 FBXL17Q9UF56 701 aa16.97■□□□□ 0.31
USP39-204ENST00000409766 DUXBA0A1W2PPF3 345 aa16.96■□□□□ 0.31
USP39-204ENST00000409766 TNFSF12O43508 249 aa16.96■□□□□ 0.31
USP39-204ENST00000409766 GFRA3O60609 400 aa16.96■□□□□ 0.31
USP39-204ENST00000409766 EIF5AP63241 154 aaKnown RBP16.96■□□□□ 0.31
USP39-204ENST00000409766 HOXA4Q00056 320 aaPredicted RBP16.96■□□□□ 0.31
USP39-204ENST00000409766 HMGN3Q15651 99 aa16.96■□□□□ 0.31
USP39-204ENST00000409766 TUSC1Q2TAM9 212 aa16.96■□□□□ 0.31
USP39-204ENST00000409766 FAM180AQ6UWF9 173 aa16.96■□□□□ 0.31
USP39-204ENST00000409766 PRR18Q8N4B5 295 aa16.96■□□□□ 0.31
USP39-204ENST00000409766 OR10V1Q8NGI7 309 aa16.96■□□□□ 0.31
USP39-204ENST00000409766 TAF9BQ9HBM6 251 aa16.96■□□□□ 0.31
USP39-204ENST00000409766 GLS2Q9UI32 602 aa16.96■□□□□ 0.31
USP39-204ENST00000409766 NUP50Q9UKX7 468 aa16.96■□□□□ 0.31
USP39-204ENST00000409766 POMT1Q9Y6A1 747 aa16.96■□□□□ 0.31
USP39-204ENST00000409766 F2RP25116 425 aa16.96■□□□□ 0.3
USP39-204ENST00000409766 MSMPQ1L6U9 139 aa16.96■□□□□ 0.3
USP39-204ENST00000409766 DMBX1Q8NFW5 382 aa16.96■□□□□ 0.3
USP39-204ENST00000409766 OR5D13Q8NGL4 314 aa16.96■□□□□ 0.3
USP39-204ENST00000409766 UFSP2Q9NUQ7 469 aa16.96■□□□□ 0.3
USP39-204ENST00000409766 TAS2R3Q9NYW6 316 aa16.96■□□□□ 0.3
USP39-204ENST00000409766 ZDHHC8Q9ULC8 765 aa16.96■□□□□ 0.3
USP39-204ENST00000409766 SPTBN2O15020 2390 aa16.95■□□□□ 0.3
USP39-204ENST00000409766 SCO1O75880 301 aa16.95■□□□□ 0.3
USP39-204ENST00000409766 IGLV2-14P01704 120 aa16.95■□□□□ 0.3
USP39-204ENST00000409766 GAPDHP04406 335 aaKnown RBP16.95■□□□□ 0.3
USP39-204ENST00000409766 C3orf36Q3SXR2 165 aa16.95■□□□□ 0.3
USP39-204ENST00000409766 OR1S2Q8NGQ3 325 aa16.95■□□□□ 0.3
USP39-204ENST00000409766 IL22RA2Q969J5 263 aa16.95■□□□□ 0.3
USP39-204ENST00000409766 ERGIC1Q969X5 290 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms