RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 TNFRSF14Q92956 283 aa24.03■■□□□ 1.44
USP42-202ENST00000404008 HDHD3Q9BSH5 251 aaPredicted RBP24.03■■□□□ 1.44
USP42-202ENST00000404008 RIMS4Q9H426 269 aaPredicted RBP24.03■■□□□ 1.44
USP42-202ENST00000404008 LINC00574Q9H8X3 128 aa24.03■■□□□ 1.44
USP42-202ENST00000404008 DIABLOQ9NR28 239 aa24.03■■□□□ 1.44
USP42-202ENST00000404008 MBNL3Q9NUK0 354 aaKnown RBP24.03■■□□□ 1.44
USP42-202ENST00000404008 CALYQ9NYX4 217 aa24.03■■□□□ 1.44
USP42-202ENST00000404008 NIPBLQ6KC79 2804 aaeCLIP24.03■■□□□ 1.44
USP42-202ENST00000404008 SERPINE3A8MV23 424 aa24.03■■□□□ 1.44
USP42-202ENST00000404008 IGHV1-8P0DP01 117 aa24.03■■□□□ 1.44
USP42-202ENST00000404008 GZMHP20718 246 aa24.03■■□□□ 1.44
USP42-202ENST00000404008 DCUN1D5Q9BTE7 237 aa24.03■■□□□ 1.44
USP42-202ENST00000404008 CHMP1AQ9HD42 196 aaPredicted RBP24.03■■□□□ 1.44
USP42-202ENST00000404008 C12orf4Q9NQ89 552 aa24.03■■□□□ 1.44
USP42-202ENST00000404008 XRCC3O43542 346 aa24.02■■□□□ 1.44
USP42-202ENST00000404008 GSTP1P09211 210 aaKnown RBP24.02■■□□□ 1.44
USP42-202ENST00000404008 HOXB4P17483 251 aaPredicted RBP24.02■■□□□ 1.44
USP42-202ENST00000404008 RCC1P18754 421 aaPredicted RBP24.02■■□□□ 1.44
USP42-202ENST00000404008 SSTR5P35346 364 aa24.02■■□□□ 1.44
USP42-202ENST00000404008 PRB3Q04118 309 aaPredicted RBP24.02■■□□□ 1.44
USP42-202ENST00000404008 ZNF260Q3ZCT1 412 aa24.02■■□□□ 1.44
USP42-202ENST00000404008 HEPN1Q6WQI6 88 aa24.02■■□□□ 1.44
USP42-202ENST00000404008 Q6ZPA2 131 aa24.02■■□□□ 1.44
USP42-202ENST00000404008 LHX4Q969G2 390 aa24.02■■□□□ 1.44
USP42-202ENST00000404008 CMSS1Q9BQ75 279 aaKnown RBP24.02■■□□□ 1.44
USP42-202ENST00000404008 BEX2Q9BXY8 128 aa24.02■■□□□ 1.44
USP42-202ENST00000404008 FN1P02751 2386 aaKnown RBP24.01■■□□□ 1.43
USP42-202ENST00000404008 TRBV6-6A0A0A6YYG2 114 aa24.01■■□□□ 1.43
USP42-202ENST00000404008 TRAV40A0A0B4J280 105 aa24.01■■□□□ 1.43
USP42-202ENST00000404008 MMP23AO75900 390 aa24.01■■□□□ 1.43
USP42-202ENST00000404008 IGHV4-38-2P0DP08 117 aa24.01■■□□□ 1.43
USP42-202ENST00000404008 ELK1P19419 428 aa24.01■■□□□ 1.43
USP42-202ENST00000404008 C6orf183Q5T699 404 aa24.01■■□□□ 1.43
USP42-202ENST00000404008 PRAMEF5Q5TYX0 476 aa24.01■■□□□ 1.43
USP42-202ENST00000404008 NCR3LG1Q68D85 454 aa24.01■■□□□ 1.43
USP42-202ENST00000404008 ZNF880Q6PDB4 577 aa24.01■■□□□ 1.43
USP42-202ENST00000404008 ZNF782Q6ZMW2 699 aaPredicted RBP24.01■■□□□ 1.43
USP42-202ENST00000404008 ELF5Q9UKW6 265 aaPredicted RBP24.01■■□□□ 1.43
USP42-202ENST00000404008 TRAV18A0A075B6X5 111 aa24■■□□□ 1.43
USP42-202ENST00000404008 CENPVL3A0A0U1RRI6 287 aa24■■□□□ 1.43
USP42-202ENST00000404008 NPIPB11E5RHQ5 1161 aa24■■□□□ 1.43
USP42-202ENST00000404008 RNASEK-C17orf49H0YIS7 233 aa24■■□□□ 1.43
USP42-202ENST00000404008 C15orf65H3BRN8 121 aa24■■□□□ 1.43
USP42-202ENST00000404008 ORC5O43913 435 aa24■■□□□ 1.43
USP42-202ENST00000404008 CD3GP09693 182 aa24■■□□□ 1.43
USP42-202ENST00000404008 OMGP23515 440 aa24■■□□□ 1.43
USP42-202ENST00000404008 HACD4Q5VWC8 232 aa24■■□□□ 1.43
USP42-202ENST00000404008 TRAT1Q6PIZ9 186 aa24■■□□□ 1.43
USP42-202ENST00000404008 NXF2Q9GZY0 626 aaKnown RBP24■■□□□ 1.43
USP42-202ENST00000404008 SESN1Q9Y6P5 492 aa24■■□□□ 1.43
USP42-202ENST00000404008 TMEM235A6NFC5 223 aa23.99■■□□□ 1.43
USP42-202ENST00000404008 A6NHS1 94 aa23.99■■□□□ 1.43
USP42-202ENST00000404008 POM121CA8CG34 1229 aa23.99■■□□□ 1.43
USP42-202ENST00000404008 C12orf77C9JDV5 145 aa23.99■■□□□ 1.43
USP42-202ENST00000404008 SRP14P37108 136 aaKnown RBP23.99■■□□□ 1.43
USP42-202ENST00000404008 GDNFP39905 211 aa23.99■■□□□ 1.43
USP42-202ENST00000404008 KLRD1Q13241 179 aa23.99■■□□□ 1.43
USP42-202ENST00000404008 HCP5Q6MZN7 132 aa23.99■■□□□ 1.43
USP42-202ENST00000404008 LURAP1LQ8IV03 231 aa23.99■■□□□ 1.43
USP42-202ENST00000404008 IGHV3OR16-10A0A075B7F0 116 aa23.98■■□□□ 1.43
USP42-202ENST00000404008 CRLF1O75462 422 aa23.98■■□□□ 1.43
USP42-202ENST00000404008 MRPS15P82914 257 aaKnown RBP23.98■■□□□ 1.43
USP42-202ENST00000404008 ARFRP1Q13795 201 aa23.98■■□□□ 1.43
USP42-202ENST00000404008 CHRFAM7AQ494W8 412 aa23.98■■□□□ 1.43
USP42-202ENST00000404008 TMEM69Q5SWH9 247 aa23.98■■□□□ 1.43
USP42-202ENST00000404008 GPR157Q5UAW9 335 aa23.98■■□□□ 1.43
USP42-202ENST00000404008 MOB1BQ7L9L4 216 aa23.98■■□□□ 1.43
USP42-202ENST00000404008 ZNF554Q86TJ5 538 aa23.98■■□□□ 1.43
USP42-202ENST00000404008 IZUMO1Q8IYV9 350 aa23.98■■□□□ 1.43
USP42-202ENST00000404008 DTX3Q8N9I9 347 aa23.98■■□□□ 1.43
USP42-202ENST00000404008 ARL11Q969Q4 196 aa23.98■■□□□ 1.43
USP42-202ENST00000404008 MIXL1Q9H2W2 232 aa23.98■■□□□ 1.43
USP42-202ENST00000404008 NUP50Q9UKX7 468 aa23.98■■□□□ 1.43
USP42-202ENST00000404008 ZFHX3Q15911 3703 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 CTDSP2O14595 271 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 RGS5O15539 181 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 PNLIPRP3Q17RR3 467 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 PDZD9Q8IXQ8 264 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 MCFD2Q8NI22 146 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 RFESDQ8TAC1 157 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 SETD6Q8TBK2 473 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 KIRREL1Q96J84 757 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 TMEM133Q9H2Q1 129 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 AUNIPQ9H7T9 357 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 HEXA-AS1Q9H8Q6 139 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 TAF9BQ9HBM6 251 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 IDI2-AS1Q9NZ38 188 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 KCNIP1Q9NZI2 227 aa23.97■■□□□ 1.43
USP42-202ENST00000404008 BAIAP2L2Q6UXY1 529 aa23.96■■□□□ 1.43
USP42-202ENST00000404008 LAX1Q8IWV1 398 aa23.96■■□□□ 1.43
USP42-202ENST00000404008 OR10A7Q8NGE5 316 aa23.96■■□□□ 1.43
USP42-202ENST00000404008 UBALD1Q8TB05 177 aa23.96■■□□□ 1.43
USP42-202ENST00000404008 C6orf62Q9GZU0 229 aaPredicted RBP23.96■■□□□ 1.43
USP42-202ENST00000404008 Q9N2K0 584 aa23.96■■□□□ 1.43
USP42-202ENST00000404008 IGHV1-69DA0A0B4J2H0 117 aa23.95■■□□□ 1.42
USP42-202ENST00000404008 FAM25AB3EWG3 89 aa23.95■■□□□ 1.42
USP42-202ENST00000404008 FAM25CB3EWG5 89 aa23.95■■□□□ 1.42
USP42-202ENST00000404008 FAM25GB3EWG6 89 aa23.95■■□□□ 1.42
USP42-202ENST00000404008 IGHV1-69P01742 117 aa23.95■■□□□ 1.42
USP42-202ENST00000404008 MELTFP08582 738 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms