RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 SSX3Q99909 188 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 HSF4Q9ULV5 492 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 IGKV1-12A0A0C4DH73 117 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 CLDN34H7C241 214 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 NGFP01138 241 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 IGKV1D-12P01611 117 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 CEACAM6P40199 344 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 UBE2G2P60604 165 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 ANGPTL4Q9BY76 406 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 GPR61Q9BZJ8 451 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 DOK5Q9P104 306 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 TGIF2-C20orf24A0A0A6YYL0 155 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 A0A0G2JMM0 328 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 A0A1W2PPB8 328 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 A0A1W2PRS3 328 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 KIR3DP1A8MWS1 328 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 NCR3LG1Q68D85 454 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 BOD1Q96IK1 185 aa13.92□□□□□ -0.18
PCDH1-203ENST00000394536 SF3B5Q9BWJ5 86 aaKnown RBP13.92□□□□□ -0.18
PCDH1-203ENST00000394536 TTC28Q96AY4 2481 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 IGKV1-27A0A075B6S5 117 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 PIGBOS1A0A0B4J2F0 54 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 MAP1LC3B2A6NCE7 125 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 RPL36A-HNRNPH2H7BZ11 118 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 NDUFA2O43678 99 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 IGHV3-13P01766 116 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 IGHV3-7P01780 117 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 C6orf15Q6UXA7 325 aaPredicted RBP13.91□□□□□ -0.18
PCDH1-203ENST00000394536 ZNF383Q8NA42 475 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 MAP1LC3BQ9GZQ8 125 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 WNT5BQ9H1J7 359 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 AURKAIP1Q9NWT8 199 aaPredicted RBP13.91□□□□□ -0.18
PCDH1-203ENST00000394536 GNG12Q9UBI6 72 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 ZNF391Q9UJN7 358 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 SHISA7A6NL88 538 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 SYNGR2O43760 224 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 C10orf128Q5T292 105 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 DMBX1Q8NFW5 382 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 FGFBP3Q8TAT2 258 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 TUBD1Q9UJT1 453 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 IGHV1-45A0A0A0MS14 117 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 CCL1P22362 96 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 GNG3P63215 75 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 GALNT14Q96FL9 552 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 KIAA1456Q9P272 454 aa13.91□□□□□ -0.18
PCDH1-203ENST00000394536 PMS2P1A4D2B8 440 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 PTGDSP41222 190 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 PDLIM3Q53GG5 364 aaPredicted RBP13.9□□□□□ -0.18
PCDH1-203ENST00000394536 MYPOPQ86VE0 399 aaPredicted RBP13.9□□□□□ -0.18
PCDH1-203ENST00000394536 MAFAQ8NHW3 353 aaPredicted RBP13.9□□□□□ -0.18
PCDH1-203ENST00000394536 ATP5SQ99766 215 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 DEFB108AA8MXU0 73 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 CLN5O75503 358 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 CER1O95813 267 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 B2MP61769 119 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 TGFBR3Q03167 851 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 SPEM2Q0P670 501 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 KCNMB1Q16558 191 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 OR10V1Q8NGI7 309 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 LIME1Q9H400 295 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 COA4Q9NYJ1 87 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 LOXL2Q9Y4K0 774 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 FREM1Q5H8C1 2179 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 IGLV3-12A0A075B6K2 115 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 SCGB1D1O95968 90 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 RPS2P15880 293 aaKnown RBP13.9□□□□□ -0.18
PCDH1-203ENST00000394536 ERVS71-1P61550 626 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 IL24Q13007 206 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 ZNF66Q6ZN08 573 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 GCNT2Q8N0V5 402 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 DNASE2BQ8WZ79 361 aa13.9□□□□□ -0.18
PCDH1-203ENST00000394536 SUCLG1P53597 346 aaKnown RBP13.89□□□□□ -0.19
PCDH1-203ENST00000394536 RAB4BP61018 213 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 CATR1Q13166 79 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 SELENOHQ8IZQ5 122 aaKnown RBP13.89□□□□□ -0.19
PCDH1-203ENST00000394536 RAB40CQ96S21 281 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 GINS3Q9BRX5 216 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 DUSP13Q9UII6 198 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 RRP8O43159 456 aaKnown RBP13.89□□□□□ -0.19
PCDH1-203ENST00000394536 IGFBP7Q16270 282 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 TMEM54Q969K7 222 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 HEYLQ9NQ87 328 aaPredicted RBP13.89□□□□□ -0.19
PCDH1-203ENST00000394536 SYNGR3O43761 229 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 F2RP25116 425 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 FABP6P51161 128 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 RPS23P62266 143 aaKnown RBP13.89□□□□□ -0.19
PCDH1-203ENST00000394536 HIKESHIQ53FT3 197 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 SLC25A53Q5H9E4 307 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 OR10P1Q8NGE3 313 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 ARV1Q9H2C2 271 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 TCFL5Q9UL49 500 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 PCNX1Q96RV3 2341 aa13.89□□□□□ -0.19
PCDH1-203ENST00000394536 CDIPTO14735 213 aa13.88□□□□□ -0.19
PCDH1-203ENST00000394536 CYTIPO60759 359 aa13.88□□□□□ -0.19
PCDH1-203ENST00000394536 ZNF737O75373 536 aa13.88□□□□□ -0.19
PCDH1-203ENST00000394536 H2BFWTQ7Z2G1 175 aa13.88□□□□□ -0.19
PCDH1-203ENST00000394536 RIMS4Q9H426 269 aaPredicted RBP13.88□□□□□ -0.19
PCDH1-203ENST00000394536 GCM1Q9NP62 436 aa13.88□□□□□ -0.19
PCDH1-203ENST00000394536 IGHV3-43A0A0B4J1X8 118 aa13.88□□□□□ -0.19
PCDH1-203ENST00000394536 IGHV3-43DP0DP04 118 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms