RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 ELL3Q9HB65 397 aaPredicted RBP12.66□□□□□ -0.38
VPS9D1-201ENST00000389386 LANCL2Q9NS86 450 aa12.66□□□□□ -0.38
VPS9D1-201ENST00000389386 MED29Q9NX70 200 aa12.66□□□□□ -0.38
VPS9D1-201ENST00000389386 B3GAT1Q9P2W7 334 aa12.66□□□□□ -0.38
VPS9D1-201ENST00000389386 LHFPL6Q9Y693 200 aa12.66□□□□□ -0.38
VPS9D1-201ENST00000389386 TMEM131Q92545 1883 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 IGHV1OR15-9A0A0B4J2B8 117 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 MAP1LC3B2A6NCE7 125 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 LILRA1O75019 489 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 CDKN1BP46527 198 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 CCR5P51681 352 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 DOK3Q7L591 496 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 ABHD14BQ96IU4 210 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 MAP1LC3BQ9GZQ8 125 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 FOXJ2Q9P0K8 574 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 A0A1B0GUS0 222 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 NXPH2O95156 264 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 DDAH2O95865 285 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 CHRNB4P30926 498 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 DAP3P51398 398 aaKnown RBP12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 RTP5Q14D33 572 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 ASCC3Q8N3C0 2202 aaKnown RBP12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 VSIRQ9H7M9 311 aa12.65□□□□□ -0.38
VPS9D1-201ENST00000389386 IGHV5-51A0A0C4DH38 117 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 HLA-HP01893 362 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 CD33P20138 364 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 ZNF133P52736 654 aaPredicted RBP12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 UCP3P55916 312 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 SELENOTP62341 195 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 ZP4Q12836 540 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 TOMM20LQ6UXN7 152 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 LIN37Q96GY3 246 aaPredicted RBP12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 CCDC163A0A0D9SF12 145 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 C3orf85A0A1B0GTC6 90 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 LRRC3CA6NJW4 275 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 H0YIG0 161 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 CIDEAO60543 219 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 KBTBD11O94819 623 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 ID3Q02535 119 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 EXT1Q16394 746 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 TPTE2P1Q5T6R2 138 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 CCDC71LQ8N9Z2 235 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 MOB3AQ96BX8 217 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 Q96M66 194 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 TMEM222Q9H0R3 208 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 RBKSQ9H477 322 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 SERINC1Q9NRX5 453 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 TMEM106BQ9NUM4 274 aa12.64□□□□□ -0.39
VPS9D1-201ENST00000389386 FCGR2AP12318 317 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 FOXL2P58012 376 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 RANP62826 216 aaKnown RBP12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 EIF3IQ13347 325 aaKnown RBP12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 PRTGQ2VWP7 1150 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 LEMD1Q68G75 181 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 EXTL1Q92935 676 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 IL22RA2Q969J5 263 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 SPIN2AQ99865 258 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 SPIN2BQ9BPZ2 258 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 OR51I2Q9H344 312 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 C20orf202A1L168 122 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 NKX6-3A6NJ46 265 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 C17orf105B2RV13 164 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 C10orf142B7Z368 130 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 MPPED1O15442 326 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 CCL25O15444 150 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 CHST1O43916 411 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 DTYMKP23919 212 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 BLKP51451 505 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 SRPXP78539 464 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 MRPS34P82930 218 aaKnown RBP12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 POU3F1Q03052 451 aaPredicted RBP12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 GRINAQ7Z429 371 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 Q8NFD4 153 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 SIGLEC12Q96PQ1 595 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 SIT1Q9Y3P8 196 aa12.63□□□□□ -0.39
VPS9D1-201ENST00000389386 E9PLN8 166 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 SLC33A1O00400 549 aaPredicted RBP12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 ADAM20O43506 726 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 TCN2P20062 427 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 SRP14P37108 136 aaKnown RBP12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 OR1D4P47884 311 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 NPBWR2P48146 333 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 PAX9P55771 341 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 RPL15P61313 204 aaKnown RBP12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 CST9LP1Q5W188 147 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 PLPPR1Q8TBJ4 325 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 SLC35E1Q96K37 410 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 TMEM56Q96MV1 263 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 RSG1Q9BU20 258 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 EMC6Q9BV81 110 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 REPIN1Q9BWE0 567 aaKnown RBP12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 PAM16Q9Y3D7 125 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 TMEM56-RWDD3S4R434 201 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 C5orf63A6NC05 138 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 NDUFB8O95169 186 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 IFNA5P01569 189 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 TDGF1P13385 188 aa12.62□□□□□ -0.39
VPS9D1-201ENST00000389386 CD38P28907 300 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms