RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 TBC1D29Q9UFV1 150 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 TRA2AQ13595 282 aaKnown RBP eCLIP11.78□□□□□ -0.52
COL6A3-202ENST00000347401 SMAD2Q15796 467 aaKnown RBP11.78□□□□□ -0.52
COL6A3-202ENST00000347401 HMGCLL1Q8TB92 370 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 ORAI1Q96D31 301 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 THOC3Q96J01 351 aaKnown RBP11.78□□□□□ -0.52
COL6A3-202ENST00000347401 PPYP01298 95 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 LIMK1P53667 647 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 RAC3P60763 192 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 GAB4Q2WGN9 574 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 RSRP1Q9BUV0 290 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 A0A0B4J293 547 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 TMEM210A6NLX4 147 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 RBP4P02753 201 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 B4GALT1P15291 398 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 CXCL3P19876 107 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 FHITP49789 147 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 SF3B5Q9BWJ5 86 aaKnown RBP11.78□□□□□ -0.52
COL6A3-202ENST00000347401 TET1Q8NFU7 2136 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 SIPA1L1O43166 1804 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 INSM1Q01101 510 aaPredicted RBP11.78□□□□□ -0.52
COL6A3-202ENST00000347401 TMEM30BQ3MIR4 351 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 MRPL30Q8TCC3 161 aaKnown RBP11.78□□□□□ -0.52
COL6A3-202ENST00000347401 NTMQ9P121 344 aa11.78□□□□□ -0.52
COL6A3-202ENST00000347401 SOD3P08294 240 aa11.77□□□□□ -0.52
COL6A3-202ENST00000347401 FBXO46Q6PJ61 603 aaPredicted RBP11.77□□□□□ -0.52
COL6A3-202ENST00000347401 PQLC2Q6ZP29 291 aa11.77□□□□□ -0.52
COL6A3-202ENST00000347401 ADAMTS17Q8TE56 1095 aa11.77□□□□□ -0.52
COL6A3-202ENST00000347401 TSPAN32Q96QS1 320 aa11.77□□□□□ -0.52
COL6A3-202ENST00000347401 DNAJB12Q9NXW2 375 aaKnown RBP11.77□□□□□ -0.52
COL6A3-202ENST00000347401 CES1P1Q9UKY3 287 aa11.77□□□□□ -0.52
COL6A3-202ENST00000347401 GBGT1Q8N5D6 347 aa11.77□□□□□ -0.52
COL6A3-202ENST00000347401 GUCD1Q96NT3 240 aa11.77□□□□□ -0.52
COL6A3-202ENST00000347401 AQP10Q96PS8 301 aa11.77□□□□□ -0.52
COL6A3-202ENST00000347401 WDR13Q9H1Z4 485 aa11.77□□□□□ -0.52
COL6A3-202ENST00000347401 EML6Q6ZMW3 1958 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 PRKRAO75569 313 aaKnown RBP11.77□□□□□ -0.53
COL6A3-202ENST00000347401 ZGLP1P0C6A0 271 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 TNFSF10P50591 281 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 ZNF260Q3ZCT1 412 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 CLEC18BQ6UXF7 455 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 OR11H7Q8NGC8 314 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 LOC107984156A0A0G2JMH3 177 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 OR4C46A6NHA9 309 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 IRF3Q14653 427 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 ARL17AQ8IVW1 177 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 MISP3Q96FF7 219 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 LPAR5Q9H1C0 372 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 PSG11Q9UQ72 335 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 FCMRO60667 390 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 VENTXO95231 258 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 SELENOPP49908 381 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 AESQ08117 197 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 ZNF77Q15935 545 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 C10orf113Q5VZT2 155 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 NRIP2Q9BQI9 281 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 LMO7DNF2Z398 122 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 TCF24Q7RTU0 167 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 PTPMT1Q8WUK0 201 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-202ENST00000347401 LINC01553A4QN01 128 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 TMEM202A6NGA9 273 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 K7ESF4 209 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 EMDP50402 254 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 RPEQ96AT9 228 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 CHST5Q9GZS9 411 aa11.77□□□□□ -0.53
COL6A3-202ENST00000347401 SPNS2Q8IVW8 549 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 RCC2Q9P258 522 aaKnown RBP11.76□□□□□ -0.53
COL6A3-202ENST00000347401 FBXO4Q9UKT5 387 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 NYNRINQ9P2P1 1898 aaKnown RBP11.76□□□□□ -0.53
COL6A3-202ENST00000347401 LCN2P80188 198 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 OR1B1Q8NGR6 318 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 FOXB1Q99853 325 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 ZBP1Q9H171 429 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 DHCR7Q9UBM7 475 aaKnown RBP11.76□□□□□ -0.53
COL6A3-202ENST00000347401 SOCS7O14512 581 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 FMODQ06828 376 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 CNRIP1Q96F85 164 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-202ENST00000347401 TMEM208Q9BTX3 173 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 HCFC2Q9Y5Z7 792 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 ATP23Q9Y6H3 246 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 H0Y980 276 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 IFI6P09912 130 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 GGTLC2Q14390 218 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 C12orf76Q8N812 135 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-202ENST00000347401 LY75O60449 1722 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 SLC17A3O00476 420 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 CD40P25942 277 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 TMEM255AQ5JRV8 349 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 TCF23Q7RTU1 214 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 C16orf82Q7Z2V1 217 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 OR4C3Q8NH37 302 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 TMEM45BQ96B21 275 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 NDUFS8O00217 210 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 SP6Q3SY56 376 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 BADQ92934 168 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 AKIRIN1Q9H9L7 192 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-202ENST00000347401 A0A1W2PQD3 144 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 GNB2P62879 340 aa11.76□□□□□ -0.53
COL6A3-202ENST00000347401 A0A0U1RQV5 110 aa11.75□□□□□ -0.53
COL6A3-202ENST00000347401 DHRS7CA6NNS2 312 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms