RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 ARHGEF39Q8N4T4 335 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 TSTD1Q8NFU3 115 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 NUS1Q96E22 293 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 FAM71F1Q96KD3 344 aaPredicted RBP8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 POM121L2Q96KW2 1035 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 LIME1Q9H400 295 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 GPR27Q9NS67 375 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 RNF186Q9NXI6 227 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 CLEC1BQ9P126 229 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 NXT1Q9UKK6 140 aaKnown RBP8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 FREM3P0C091 2139 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 PCNX3Q9H6A9 2034 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 LINC01553A4QN01 128 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 TRAF3IP2O43734 574 aaPredicted RBP8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 ATXN8OSP0DMR3 200 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 DRD1P21728 446 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 CFPP27918 469 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 CCL14Q16627 93 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 LRRC10Q5BKY1 277 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 PRR31Q5SQ13 230 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 KCTD18Q6PI47 426 aaPredicted RBP8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 FAM57BQ71RH2 274 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 ODF3L1Q8IXM7 274 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 PPTC7Q8NI37 304 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 EMG1Q92979 244 aaKnown RBP8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 ZNF479Q96JC4 524 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 AGMATQ9BSE5 352 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 CHRDL1Q9BU40 450 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 PLEKHF2Q9H8W4 249 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 MRPS16Q9Y3D3 137 aaKnown RBP8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 THSD7BQ9C0I4 1608 aa8.34□□□□□ -1.07
PTCHD4-201ENST00000339488 KIAA1324LA8MWY0 1029 aaPredicted RBP8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 SPINT1O43278 529 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 KBTBD11O94819 623 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 TMEM50AO95807 157 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 DEFA4P12838 97 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 ANOS1P23352 680 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 MLF2Q15773 248 aaPredicted RBP8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 ZNF74Q16587 644 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 WDR82Q6UXN9 313 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 ZNF788Q6ZQV5 615 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 MUC15Q8N387 334 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 OR8G5Q8NG78 346 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 OR4A5Q8NH83 315 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 SNIP1Q8TAD8 396 aaKnown RBP8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 DERL1Q9BUN8 251 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 PELI2Q9HAT8 420 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 TMEM38BQ9NVV0 291 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 TDRD6O60522 2096 aaKnown RBP8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 DPRXA6NFQ7 191 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 NUDT21O43809 227 aaKnown RBP8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 PITX3O75364 302 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 STC2O76061 302 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 TYMSP04818 313 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 IGLL1P15814 213 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 HIST1H1DP16402 221 aaKnown RBP8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 GNRHRP30968 328 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 GPR6P46095 362 aaPredicted RBP8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 OR3A4PP47883 348 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 PRDX4Q13162 271 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 Q56UQ5 140 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 FAM71F2Q6NXP2 309 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 KCNIP4Q6PIL6 250 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 TMEM252Q8N6L7 170 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 TCTEX1D1Q8N7M0 179 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 OR10G4Q8NGN3 311 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 OR4F5Q8NH21 305 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 AIF1LQ9BQI0 150 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 NPVFQ9HCQ7 196 aa8.33□□□□□ -1.08
PTCHD4-201ENST00000339488 SHANK1Q9Y566 2161 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 NKX2-6A6NCS4 301 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 FBLL1A6NHQ2 334 aaKnown RBP8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 CEACAM18A8MTB9 384 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 ZNF737O75373 536 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 TIAF1O95411 115 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 BRI3O95415 125 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 IGLC1P0CG04 106 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 THBS3P49746 956 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 CLDN15P56746 228 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 HERV-K104P63124 156 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 QRFPP83859 136 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 BAXQ07812 192 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 ZP4Q12836 540 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 NNATQ16517 81 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 SPIN3Q5JUX0 258 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 GLIPR1L1Q6UWM5 242 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 PRR22Q8IZ63 422 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 FBXO22Q8NEZ5 403 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 SGMS2Q8NHU3 365 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 KCNG3Q8TAE7 436 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 DAZLQ92904 295 aaKnown RBP8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 SCGB3A2Q96PL1 93 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 MRPL27Q9P0M9 148 aaKnown RBP8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 CNTRLQ7Z7A1 2325 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 CRYM-AS1A6NIL9 109 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 BGLAPP02818 100 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 GPX1P07203 203 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 FOXE3Q13461 319 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 LINC00346Q8IVM7 164 aa8.32□□□□□ -1.08
PTCHD4-201ENST00000339488 GATSQ8NAP1 163 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms