RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 IGSF11Q5DX21 431 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 METTL11BQ5VVY1 283 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 GLDNQ6ZMI3 551 aaPredicted RBP12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 MUC20Q8N307 709 aaPredicted RBP12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 ZNRF1Q8ND25 227 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 DEFB108BQ8NET1 73 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 FAM216AQ8WUB2 273 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 CCDC107Q8WV48 283 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 CCL13Q99616 98 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 LIME1Q9H400 295 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 LINC00574Q9H8X3 128 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 CHODLQ9H9P2 273 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 TAF9BQ9HBM6 251 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 KCNIP1Q9NZI2 227 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 OR6C3Q9NZP0 311 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 ZNF221Q9UK13 617 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 VSIG4Q9Y279 399 aa12.41□□□□□ -0.42
CCDC88C-202ENST00000334448 OR5H14A6NHG9 310 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 C12orf77C9JDV5 145 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 F12P00748 615 aaPredicted RBP12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 CGB3P0DN86 165 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 CGB7P0DN87 165 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 DAOP14920 347 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 GZMHP20718 246 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 GLIPR1P48060 266 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 TMEM33P57088 247 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 TAS2R31P59538 309 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 TMEM30BQ3MIR4 351 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 SLC25A42Q86VD7 318 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 H1FOOQ8IZA3 346 aaPredicted RBP12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 FAM216BQ8N7L0 139 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 TMEM185AQ8NFB2 350 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 CORO2AQ92828 525 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 C14orf79Q96F83 325 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 TMEM246Q9BRR3 403 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 ZNF2Q9BSG1 426 aaPredicted RBP12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 FXYD6Q9H0Q3 95 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 RAB9BQ9NP90 201 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 SLC23A1Q9UHI7 598 aa12.4□□□□□ -0.42
CCDC88C-202ENST00000334448 A0A0A6YYJ9 748 aa12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 C15orf65H3BRN8 121 aa12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 ZNF205O95201 554 aa12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 PPYP01298 95 aa12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 HEXAP06865 529 aa12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 CTSDP07339 412 aaPredicted RBP12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 VSIG10L2P0DP72 767 aa12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 SELLP14151 372 aa12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 FCGR2CP31995 323 aa12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 HTD2P86397 168 aa12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 MEF2CQ06413 473 aaPredicted RBP12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 OR13A1Q8NGR1 328 aa12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 C5orf66Q9H5L9 145 aa12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 LPAR3Q9UBY5 353 aa12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 RALYQ9UKM9 306 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-202ENST00000334448 USP9YO00507 2555 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 A0A1B0GW55 424 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 HMX3A6NHT5 357 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 F2RL2O00254 374 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 GPR37O15354 613 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 TMPRSS2O15393 492 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 RLN1P04808 185 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 DUX4L2P0CJ85 424 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 DUX4L3P0CJ86 424 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 DUX4L4P0CJ87 422 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 DUX4L5P0CJ88 424 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 DUX4L6P0CJ89 424 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 DUX4L7P0CJ90 424 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 PAX1P15863 534 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 ANXA7P20073 488 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 NPY4RP50391 375 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 RAB25P57735 213 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 DHODHQ02127 395 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 ZNF626Q68DY1 528 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 SP5Q6BEB4 398 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 DUX4L9Q6RFH8 374 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 ZNF565Q8N9K5 539 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 MARCH1Q8TCQ1 289 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 RAB1CQ92928 201 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 PPP1R14BQ96C90 147 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 TIMD4Q96H15 378 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 ZNF486Q96H40 463 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 KIRREL1Q96J84 757 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 NEURL2Q9BR09 285 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 OR51J1Q9H342 316 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 GPN1Q9HCN4 374 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 CTSZQ9UBR2 303 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 DUX4Q9UBX2 424 aa12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 SLC25A10Q9UBX3 287 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-202ENST00000334448 ADAM20O43506 726 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 FCN3O75636 299 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 HBZP02008 142 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 AADACP22760 399 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 CDKN1AP38936 164 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 HERV-K104P61576 105 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 EDDM3AQ14507 147 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 MSMO1Q15800 293 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 C11orf91Q3C1V1 193 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 LRRC10Q5BKY1 277 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 TCF23Q7RTU1 214 aa12.37□□□□□ -0.43
CCDC88C-202ENST00000334448 SLC38A6Q8IZM9 456 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms