RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CA5BP1Q8WTZ4 195 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 MED29Q9NX70 200 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 CXCL3P19876 107 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 COMPP49747 757 aaPredicted RBP12.64□□□□□ -0.39
COL7A1-201ENST00000328333 UBTD1Q9HAC8 227 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 NAV3Q8IVL0 2385 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 TMEM202A6NGA9 273 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 FAM157CP0CG43 387 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 PCBP3P57721 371 aaKnown RBP12.64□□□□□ -0.39
COL7A1-201ENST00000328333 CLEC18BQ6UXF7 455 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 MRGPRX1Q96LB2 322 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 ALKBH3Q96Q83 286 aaPredicted RBP12.64□□□□□ -0.39
COL7A1-201ENST00000328333 SPRY1O43609 319 aaPredicted RBP12.64□□□□□ -0.39
COL7A1-201ENST00000328333 LEPROTL1O95214 131 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 EMDP50402 254 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 RAC3P60763 192 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 KIRREL2Q6UWL6 708 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 HOXB1P14653 301 aaPredicted RBP12.64□□□□□ -0.39
COL7A1-201ENST00000328333 MFAP2P55001 183 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 PSG5Q15238 335 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 SPNS3Q6ZMD2 512 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 C12orf76Q8N812 135 aaPredicted RBP12.64□□□□□ -0.39
COL7A1-201ENST00000328333 CNTD2Q9H8S5 307 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 A0A0U1RQS6 177 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 LINC01553A4QN01 128 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 GNB2P62879 340 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 MUC15Q8N387 334 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 OR4C3Q8NH37 302 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 NEUROG1Q92886 237 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 TMEM45BQ96B21 275 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 NRIP2Q9BQI9 281 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 HSPB9Q9BQS6 159 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 CRXO43186 299 aaPredicted RBP12.63□□□□□ -0.39
COL7A1-201ENST00000328333 FCGR3BO75015 233 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 MOB3BQ86TA1 216 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 R3HDM4Q96D70 268 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 NRG2O14511 850 aaPredicted RBP12.63□□□□□ -0.39
COL7A1-201ENST00000328333 CTSVO60911 334 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 CSN3P07498 182 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 TAS2R60P59551 318 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 TCF24Q7RTU0 167 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 OR6X1Q8NH79 312 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 GPR27Q9NS67 375 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 ZDHHC8Q9ULC8 765 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 TMEM210A6NLX4 147 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 DNASE2O00115 360 aaPredicted RBP12.63□□□□□ -0.39
COL7A1-201ENST00000328333 FMODQ06828 376 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 VAX1Q5SQQ9 334 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 ATP23Q9Y6H3 246 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 LOC285556D6RIA3 1793 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 TMEM131Q92545 1883 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 KCNE1BA0A087WTH5 132 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 PPYP01298 95 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 ID1P41134 155 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 MRPL58Q14197 206 aaKnown RBP12.63□□□□□ -0.39
COL7A1-201ENST00000328333 TCF23Q7RTU1 214 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 MS4A3Q96HJ5 214 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 A0A096LPE4 126 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 A0A0B4J293 547 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 A0A1W2PPZ6 126 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 M0R1B8 84 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 SYT8Q8NBV8 401 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 DHCR7Q9UBM7 475 aaKnown RBP12.63□□□□□ -0.39
COL7A1-201ENST00000328333 IL4P05112 153 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 LYZP61626 148 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 LYG1Q8N1E2 194 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 MSL2Q9HCI7 577 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 DNAJB12Q9NXW2 375 aaKnown RBP12.63□□□□□ -0.39
COL7A1-201ENST00000328333 MTCH2Q9Y6C9 303 aa12.63□□□□□ -0.39
COL7A1-201ENST00000328333 SMIM13P0DJ93 91 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 KLF3P57682 345 aaPredicted RBP12.62□□□□□ -0.39
COL7A1-201ENST00000328333 RHNO1Q9BSD3 238 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 NUDT3O95989 172 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 DMKNQ6E0U4 476 aaPredicted RBP12.62□□□□□ -0.39
COL7A1-201ENST00000328333 LINC00696Q6ZRV3 163 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 RND1Q92730 232 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 FAM157BP0CG42 384 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 FHITP49789 147 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 OR8G5Q8NG78 346 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 CHST5Q9GZS9 411 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 TBC1D29Q9UFV1 150 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 ALG1L2C9J202 215 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 FCMRO60667 390 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 PAQR9Q6ZVX9 377 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 TSPAN32Q96QS1 320 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 RCC2Q9P258 522 aaKnown RBP12.62□□□□□ -0.39
COL7A1-201ENST00000328333 CYR61O00622 381 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 IGLV3-25P01717 112 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 TNFSF10P50591 281 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 EMP1P54849 157 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 SIGLEC5O15389 551 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 ETFBKMTQ8IXQ9 262 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 OR3A4PP47883 348 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 PTPMT1Q8WUK0 201 aaPredicted RBP12.62□□□□□ -0.39
COL7A1-201ENST00000328333 ARHGAP32A7KAX9 2087 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 SOD3P08294 240 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 ZNF750Q32MQ0 723 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 PQLC2Q6ZP29 291 aa12.62□□□□□ -0.39
COL7A1-201ENST00000328333 YRDCQ86U90 279 aaKnown RBP12.62□□□□□ -0.39
COL7A1-201ENST00000328333 PRELID3AQ96N28 172 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms