RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 ZNF391Q9UJN7 358 aa11.53□□□□□ -0.56
SKA3-202ENST00000314759 CEP192Q8TEP8 1941 aa11.53□□□□□ -0.56
SKA3-202ENST00000314759 ZNF816-ZNF321PA0A0X1KG74 233 aa11.53□□□□□ -0.56
SKA3-202ENST00000314759 EDN3P14138 238 aa11.53□□□□□ -0.56
SKA3-202ENST00000314759 LBX1P52954 281 aa11.53□□□□□ -0.56
SKA3-202ENST00000314759 ZFP36L1Q07352 338 aaKnown RBP11.53□□□□□ -0.56
SKA3-202ENST00000314759 FAM90A2PQ658T7 463 aa11.53□□□□□ -0.56
SKA3-202ENST00000314759 Q6ZS49 121 aa11.53□□□□□ -0.56
SKA3-202ENST00000314759 CPT1CQ8TCG5 803 aa11.53□□□□□ -0.56
SKA3-202ENST00000314759 SF3B5Q9BWJ5 86 aaKnown RBP11.53□□□□□ -0.56
SKA3-202ENST00000314759 CCL28Q9NRJ3 127 aa11.53□□□□□ -0.56
SKA3-202ENST00000314759 TAAR3PQ9P1P4 343 aa11.53□□□□□ -0.56
SKA3-202ENST00000314759 GNG13Q9P2W3 67 aa11.53□□□□□ -0.56
SKA3-202ENST00000314759 TNFSF12O43508 249 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 HBE1P02100 147 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 AMBPP02760 352 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 CD55P08174 381 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 MMP9P14780 707 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 CD81P60033 236 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 JOSD1Q15040 202 aaPredicted RBP11.52□□□□□ -0.57
SKA3-202ENST00000314759 DNASE2BQ8WZ79 361 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 CCDC74BQ96LY2 380 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 OCIAD1Q9NX40 245 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 LOC102723971A0A1B0GUV8 181 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 IL18BPO95998 194 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 NAPSAO96009 420 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 RAC3P60763 192 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 MPV17LQ2QL34 196 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 THNSL2Q86YJ6 484 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 OR4X1Q8NH49 305 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 RCC1LQ96I51 464 aaKnown RBP11.52□□□□□ -0.57
SKA3-202ENST00000314759 FOXB1Q99853 325 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 SH2D2AQ9NP31 389 aa11.52□□□□□ -0.57
SKA3-202ENST00000314759 KIAA1549Q9HCM3 1950 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 LOC102723996A0A087X1L8 192 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 IGHV1-45A0A0A0MS14 117 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 H3BP45 60 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 EREGO14944 169 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 TUSC2O75896 110 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 BCL3P20749 454 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 RPS18P62269 152 aaKnown RBP11.51□□□□□ -0.57
SKA3-202ENST00000314759 IL24Q13007 206 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 DPPA3Q6W0C5 159 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 IMMP1LQ96LU5 166 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 TP53TG5Q9Y2B4 290 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 IGKV1-6A0A0C4DH72 117 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 A0A0G2JRQ6 117 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 DUXBA0A1W2PPF3 345 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 ZFP92A6NM28 416 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 ZNF716A6NP11 495 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 HSPB6O14558 160 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 CYTIPO60759 359 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 RND2P52198 227 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 FOXO1Q12778 655 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 CEACAM16Q2WEN9 425 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 AAED1Q7RTV5 226 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 ZNF295-AS1Q8N0V1 137 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 Q8NFD4 153 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 OR10G4Q8NGN3 311 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 GPR87Q9BY21 358 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 IL36RNQ9UBH0 155 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 CACNA1EQ15878 2313 aa11.51□□□□□ -0.57
SKA3-202ENST00000314759 TRAV1-1A0A0B4J248 108 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 LY6G6EA0A0G2JKS1 128 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 A0A1B0GU03 582 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 ZNF705GA8MUZ8 300 aaPredicted RBP11.5□□□□□ -0.57
SKA3-202ENST00000314759 CLDN34H7C241 214 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 CBR3O75828 277 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 B3GALT5-AS1P59052 145 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 CABLES2Q9BTV7 478 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 PITPNC1Q9UKF7 332 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 U3KQA8 63 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 ZNF407Q9C0G0 2248 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 B4DEV8 164 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 UMODP07911 640 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 SSR4P51571 173 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 CARD18P57730 90 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 WDR25Q64LD2 544 aaPredicted RBP11.5□□□□□ -0.57
SKA3-202ENST00000314759 YRDCQ86U90 279 aaKnown RBP11.5□□□□□ -0.57
SKA3-202ENST00000314759 OR5D13Q8NGL4 314 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 TECTBQ96PL2 329 aa11.5□□□□□ -0.57
SKA3-202ENST00000314759 MRPL37Q9BZE1 423 aaKnown RBP11.5□□□□□ -0.57
SKA3-202ENST00000314759 PGLYRP1O75594 196 aaPredicted RBP11.49□□□□□ -0.57
SKA3-202ENST00000314759 HLA-HP01893 362 aa11.49□□□□□ -0.57
SKA3-202ENST00000314759 COX6A1P12074 109 aa11.49□□□□□ -0.57
SKA3-202ENST00000314759 NUTF2P61970 127 aaKnown RBP11.49□□□□□ -0.57
SKA3-202ENST00000314759 COL10A1Q03692 680 aa11.49□□□□□ -0.57
SKA3-202ENST00000314759 SRSF7Q16629 238 aaKnown RBP eCLIP11.49□□□□□ -0.57
SKA3-202ENST00000314759 TMEM183AQ8IXX5 376 aa11.49□□□□□ -0.57
SKA3-202ENST00000314759 CPEB3Q8NE35 698 aaKnown RBP11.49□□□□□ -0.57
SKA3-202ENST00000314759 SPSB4Q96A44 273 aa11.49□□□□□ -0.57
SKA3-202ENST00000314759 RSG1Q9BU20 258 aa11.49□□□□□ -0.57
SKA3-202ENST00000314759 NDUFAF3Q9BU61 184 aa11.49□□□□□ -0.57
SKA3-202ENST00000314759 FGF23Q9GZV9 251 aaPredicted RBP11.49□□□□□ -0.57
SKA3-202ENST00000314759 ZNF665Q9H7R5 613 aa11.49□□□□□ -0.57
SKA3-202ENST00000314759 CDH20Q9HBT6 801 aa11.49□□□□□ -0.57
SKA3-202ENST00000314759 RPRMQ9NS64 109 aa11.49□□□□□ -0.57
SKA3-202ENST00000314759 OR14J1Q9UGF5 321 aa11.49□□□□□ -0.57
SKA3-202ENST00000314759 FAM90A10PA6NDY2 464 aa11.49□□□□□ -0.57
SKA3-202ENST00000314759 FAM90A18PA6NE21 464 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms