RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CD82P27701 267 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 SPTY2D1-AS1A0A0U1RR47 76 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 FAM3BP58499 235 aaPredicted RBP8.72□□□□□ -1.01
COL6A3-201ENST00000295550 KISS1Q15726 138 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 ZNF385CQ66K41 422 aaPredicted RBP8.72□□□□□ -1.01
COL6A3-201ENST00000295550 RPS19BP1Q86WX3 136 aaKnown RBP8.72□□□□□ -1.01
COL6A3-201ENST00000295550 C10orf126Q8N4M7 172 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 CRYABP02511 175 aaKnown RBP8.72□□□□□ -1.01
COL6A3-201ENST00000295550 DDTP30046 118 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 ZNF880Q6PDB4 577 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 MUC15Q8N387 334 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 MTURNQ8N3F0 131 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 SARGQ9BW04 601 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 ZNF275Q9NSD4 429 aaPredicted RBP8.72□□□□□ -1.01
COL6A3-201ENST00000295550 ZMIZ1Q9ULJ6 1067 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 LOC389332A0A1B0GUA5 103 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 MGPP08493 103 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 COL8A1P27658 744 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 MIEN1Q9BRT3 115 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 LRRC61Q9BV99 259 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 SERGEFQ9UGK8 458 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 CD226Q15762 336 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 TMEM196Q5HYL7 178 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 TSPO2Q5TGU0 170 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 RGS7BPQ6MZT1 257 aaPredicted RBP8.72□□□□□ -1.01
COL6A3-201ENST00000295550 C7orf77A4D0Y5 90 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 CRYAAP02489 173 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 NUBPLQ8TB37 319 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 ZNF502Q8TBZ5 544 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 DHRS7CA6NNS2 312 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 ZNF260Q3ZCT1 412 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 ZNF766Q5HY98 468 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 ZNF107Q9UII5 783 aaPredicted RBP8.72□□□□□ -1.01
COL6A3-201ENST00000295550 ERRFI1Q9UJM3 462 aaPredicted RBP8.72□□□□□ -1.01
COL6A3-201ENST00000295550 EML6Q6ZMW3 1958 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 ANKRD20A5PA0PJZ0 165 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 OR2W5A6NFC9 320 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 WDR38Q5JTN6 314 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 LYG1Q8N1E2 194 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 ARL6IP6Q8N6S5 226 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 OR2I1PQ8NGU4 316 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 ABHD1Q96SE0 405 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 UQCR10Q9UDW1 63 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 VAX2Q9UIW0 290 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 ANXA10Q9UJ72 324 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 SRP14P37108 136 aaKnown RBP8.71□□□□□ -1.01
COL6A3-201ENST00000295550 LIMS1P48059 325 aa8.71□□□□□ -1.01
COL6A3-201ENST00000295550 TMEM38BQ9NVV0 291 aa8.71□□□□□ -1.01
COL6A3-201ENST00000295550 OGG1O15527 345 aa8.71□□□□□ -1.01
COL6A3-201ENST00000295550 JMJD6Q6NYC1 403 aaPredicted RBP8.71□□□□□ -1.01
COL6A3-201ENST00000295550 SSMEM1Q8WWF3 244 aa8.71□□□□□ -1.01
COL6A3-201ENST00000295550 KISS1RQ969F8 398 aaPredicted RBP8.71□□□□□ -1.01
COL6A3-201ENST00000295550 HDGFL3Q9Y3E1 203 aa8.71□□□□□ -1.01
COL6A3-201ENST00000295550 CXorf1O96002 111 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 GBGT1Q8N5D6 347 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 CYB561D1Q8N8Q1 229 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 ZDHHC16Q969W1 377 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 SPSB1Q96BD6 273 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 SNRNP40Q96DI7 357 aaKnown RBP8.71□□□□□ -1.02
COL6A3-201ENST00000295550 PLPPR2Q96GM1 343 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 C4orf45Q96LM5 186 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 CUL9Q8IWT3 2517 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 HIST1H1BP16401 226 aaKnown RBP8.71□□□□□ -1.02
COL6A3-201ENST00000295550 AESQ08117 197 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 KLF9Q13886 244 aaPredicted RBP8.71□□□□□ -1.02
COL6A3-201ENST00000295550 HAND1O96004 215 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 MVDP53602 400 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 NUP37Q8NFH4 326 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 OR4B1Q8NGF8 309 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 UBTD1Q9HAC8 227 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 ZNF391Q9UJN7 358 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 DNPH1O43598 174 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 DHRS3O75911 302 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 P2RY1P47900 373 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 MICBQ29980 383 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 ISXQ2M1V0 245 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 OR4S2Q8NH73 311 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 TMEM265A0A087WTH1 108 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 A0A1W2PPC4 97 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 ATOH1Q92858 354 aaPredicted RBP8.71□□□□□ -1.02
COL6A3-201ENST00000295550 HSPB9Q9BQS6 159 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 DEFB127Q9H1M4 99 aa8.71□□□□□ -1.02
COL6A3-201ENST00000295550 KIAA1549Q9HCM3 1950 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 GPR3P46089 330 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 MS4A3Q96HJ5 214 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 HIST1H4GQ99525 98 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 HCFC1P51610 2035 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 MFSD2BA6NFX1 497 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 RPS4Y2Q8TD47 263 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 PLA2G10O15496 165 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 C1QTNF12Q5T7M4 302 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 GPBAR1Q8TDU6 330 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 COPS9Q8WXC6 57 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 RPEQ96AT9 228 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 NTMQ9P121 344 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 LNP1A1A4G5 178 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 COX6CP09669 75 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 GFERP55789 205 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 SLC35E3Q7Z769 313 aa8.7□□□□□ -1.02
COL6A3-201ENST00000295550 OR1N1Q8NGS0 311 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms