RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 CLRN1P58418 232 aa11.33□□□□□ -0.6
NUP54-201ENST00000264883 BAXQ07812 192 aa11.33□□□□□ -0.6
NUP54-201ENST00000264883 ZNF154Q13106 437 aa11.33□□□□□ -0.6
NUP54-201ENST00000264883 TEX43Q6ZNM6 134 aa11.33□□□□□ -0.6
NUP54-201ENST00000264883 TIPARPQ7Z3E1 657 aaKnown RBP11.33□□□□□ -0.6
NUP54-201ENST00000264883 ODF3L1Q8IXM7 274 aa11.33□□□□□ -0.6
NUP54-201ENST00000264883 CADM4Q8NFZ8 388 aa11.33□□□□□ -0.6
NUP54-201ENST00000264883 OR11L1Q8NGX0 322 aa11.33□□□□□ -0.6
NUP54-201ENST00000264883 IMMP2LQ96T52 175 aa11.33□□□□□ -0.6
NUP54-201ENST00000264883 ATP5SQ99766 215 aa11.33□□□□□ -0.6
NUP54-201ENST00000264883 OR51I2Q9H344 312 aa11.33□□□□□ -0.6
NUP54-201ENST00000264883 PAM16Q9Y3D7 125 aa11.33□□□□□ -0.6
NUP54-201ENST00000264883 DNAH14Q0VDD8 3507 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 IGKV1-9A0A0C4DH69 117 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 H3BMH7 237 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 CCL25O15444 150 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 TDGF1P13385 188 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 ZNF133P52736 654 aaPredicted RBP11.32□□□□□ -0.6
NUP54-201ENST00000264883 KLF3P57682 345 aaPredicted RBP11.32□□□□□ -0.6
NUP54-201ENST00000264883 ZNF121P58317 390 aaPredicted RBP11.32□□□□□ -0.6
NUP54-201ENST00000264883 KISS1Q15726 138 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 UEVLDQ8IX04 471 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 AGMATQ9BSE5 352 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 ELL3Q9HB65 397 aaPredicted RBP11.32□□□□□ -0.6
NUP54-201ENST00000264883 RPRMQ9NS64 109 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 A0A1W2PR77 199 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 NUPR1O60356 82 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 TYMSP04818 313 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 CTSSP25774 331 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 RRADP55042 308 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 UCP3P55916 312 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 RPL23P62829 140 aaKnown RBP11.32□□□□□ -0.6
NUP54-201ENST00000264883 MRPS34P82930 218 aaKnown RBP11.32□□□□□ -0.6
NUP54-201ENST00000264883 RTP5Q14D33 572 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 SLC25A53Q5H9E4 307 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 SLC25A24Q6NUK1 477 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 OR2V1Q8NHB1 315 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 PHF3Q92576 2039 aaKnown RBP11.32□□□□□ -0.6
NUP54-201ENST00000264883 C10orf35Q96D05 121 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 ZNF845Q96IR2 970 aaPredicted RBP11.32□□□□□ -0.6
NUP54-201ENST00000264883 ZPBPQ9BS86 351 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 VAMP8Q9BV40 100 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 RBKSQ9H477 322 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 PCNX3Q9H6A9 2034 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 TMEM106BQ9NUM4 274 aa11.32□□□□□ -0.6
NUP54-201ENST00000264883 CCDC163A0A0D9SF12 145 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 K7ESF4 209 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 YPEL1O60688 119 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 CNOT4O95628 575 aaKnown RBP11.31□□□□□ -0.6
NUP54-201ENST00000264883 IFNA1P01562 189 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 ZNF17P17021 662 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 CEACAM8P31997 349 aaPredicted RBP11.31□□□□□ -0.6
NUP54-201ENST00000264883 GFERP55789 205 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 CXorf66Q5JRM2 361 aaPredicted RBP11.31□□□□□ -0.6
NUP54-201ENST00000264883 SLC25A47Q6Q0C1 308 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 FAM57BQ71RH2 274 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 MRGPRGQ86SM5 289 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 CCDC71LQ8N9Z2 235 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 PP6455Q8WZ26 134 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 YPEL2Q96QA6 119 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 RASL10BQ96S79 203 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 ZNF581Q9P0T4 197 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 A0A1B0GUS0 222 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 LRRC3CA6NJW4 275 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 K7EP13 123 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 LILRA1O75019 489 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 CD33P20138 364 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 OPRM1P35372 400 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 TPTE2P1Q5T6R2 138 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 RIPPLY2Q5TAB7 128 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 C17orf82Q86X59 251 aaPredicted RBP11.31□□□□□ -0.6
NUP54-201ENST00000264883 WDFY1Q8IWB7 410 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 ABCA7Q8IZY2 2146 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 MBD3L1Q8WWY6 194 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 SPIN2AQ99865 258 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 SPIN2BQ9BPZ2 258 aa11.31□□□□□ -0.6
NUP54-201ENST00000264883 A8MXE2 369 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 SLC33A1O00400 549 aaPredicted RBP11.3□□□□□ -0.6
NUP54-201ENST00000264883 KBTBD11O94819 623 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 NXPH2O95156 264 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 IFNA5P01569 189 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 IGLV3-1P01715 115 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 HLA-HP01893 362 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 SRP14P37108 136 aaKnown RBP11.3□□□□□ -0.6
NUP54-201ENST00000264883 ZNF726P1Q15940 193 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 DEFB119Q8N690 84 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.3□□□□□ -0.6
NUP54-201ENST00000264883 ANAPC16Q96DE5 110 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 TECTBQ96PL2 329 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 CIB3Q96Q77 187 aaPredicted RBP11.3□□□□□ -0.6
NUP54-201ENST00000264883 ZNF319Q9P2F9 582 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 CEP192Q8TEP8 1941 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 TNFSF12O43508 249 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 NDUFB8O95169 186 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 TMEM50AO95807 157 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 CD38P28907 300 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 ARL4DP49703 201 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 UBE2NP61088 152 aaKnown RBP11.3□□□□□ -0.6
NUP54-201ENST00000264883 D2HGDHQ8N465 521 aa11.3□□□□□ -0.6
NUP54-201ENST00000264883 CMTM2Q8TAZ6 248 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms