RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 LSM11P83369 360 aaKnown RBP eCLIP11.74□□□□□ -0.53
LDLR-201ENST00000252444 WBP1Q96G27 269 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 PATZ1Q9HBE1 687 aaKnown RBP11.74□□□□□ -0.53
LDLR-201ENST00000252444 SPRR3Q9UBC9 169 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 C3orf80F5H4A9 247 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 FCGR3BO75015 233 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 CFDP00746 253 aaPredicted RBP11.74□□□□□ -0.53
LDLR-201ENST00000252444 INHBBP09529 407 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 H3F3AP84243 136 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 UQCC3Q6UW78 93 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 VOPP1Q96AW1 172 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 GCM1Q9NP62 436 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 TGFBR1P36897 503 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 GNB1P62873 340 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 STUMQ69YW2 141 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 BAP18Q8IXM2 172 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 FAM213BQ8TBF2 198 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 ORAI1Q96D31 301 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 SOX7Q9BT81 388 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 XKRY2A2RUG3 117 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 ATP6V1G2-DDX39BF2Z307 99 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 SYNGR1O43759 233 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 OR2H2O95918 312 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 H2AFB1P0C5Y9 115 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 SPANXN5Q5MJ07 72 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 MARC2Q969Z3 335 aa11.74□□□□□ -0.53
LDLR-201ENST00000252444 SCN3AQ9NY46 2000 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 F2RP25116 425 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 LGALS7P47929 136 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 GZMKP49863 264 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 Q0VFX4 171 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 IL34Q6ZMJ4 242 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 ADGRG7Q96K78 797 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 FAM106CPP0CH98 169 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 TBC1D26Q86UD7 250 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 CD80P33681 288 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 P2RX3P56373 397 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 HIST1H3AP68431 136 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 HIST2H3PS2Q5TEC6 136 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 OTPQ5XKR4 325 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 CALHM1Q8IU99 346 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 OR1L8Q8NGR8 309 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 OR9G1Q8NH87 305 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 COL25A1Q9BXS0 654 aaPredicted RBP11.73□□□□□ -0.53
LDLR-201ENST00000252444 MYLKQ15746 1914 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 CELA3AP09093 270 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 B3GALT5-AS1P59052 145 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 WDR31Q8NA23 367 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 MOB3AQ96BX8 217 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 RALYQ9UKM9 306 aaKnown RBP11.73□□□□□ -0.53
LDLR-201ENST00000252444 ZMIZ1Q9ULJ6 1067 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 J3QRE1 110 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 IGFBP3P17936 291 aaPredicted RBP11.73□□□□□ -0.53
LDLR-201ENST00000252444 CA7P43166 264 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 C4orf17Q53FE4 359 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 VWA1Q6PCB0 445 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 PCSK4Q6UW60 755 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 CADM3Q8N126 398 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 SLC45A2Q9UMX9 530 aa11.73□□□□□ -0.53
LDLR-201ENST00000252444 C2orf16Q68DN1 1984 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 CD74P04233 296 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 MELTFP08582 738 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 SNAI3Q3KNW1 292 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 OR8G2PQ6IF36 304 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 MITD1Q8WV92 249 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 WASHC3Q9Y3C0 194 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 INSIG2Q9Y5U4 225 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 COX7A2P2O60397 106 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 GLI4P10075 376 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 HOXD11P31277 338 aaPredicted RBP11.72□□□□□ -0.53
LDLR-201ENST00000252444 ZNF816Q0VGE8 651 aaPredicted RBP11.72□□□□□ -0.53
LDLR-201ENST00000252444 PPP1R1AQ13522 171 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 GGNBP1Q5YKI7 109 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 PPP1R3EQ9H7J1 279 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 SIRT4Q9Y6E7 314 aaPredicted RBP11.72□□□□□ -0.53
LDLR-201ENST00000252444 ODAMA1E959 279 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 EFNB1P98172 346 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 HIST3H3Q16695 136 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 STXBP6Q8NFX7 210 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 MAFIPQ8WZ33 124 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 PLSCR2Q9NRY7 297 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 MDFIC2A0A1B0GVS7 189 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 H3BMH7 237 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 SEMA7AO75326 666 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 ATP6V1G1O75348 118 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 RND3P61587 244 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 CLINT1Q14677 625 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 ADAM5Q6NVV9 412 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 BPIFCQ8NFQ6 507 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 PPP1R1CQ8WVI7 109 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 SDSLQ96GA7 329 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 AMELYQ99218 206 aa11.72□□□□□ -0.53
LDLR-201ENST00000252444 TDRD6O60522 2096 aaKnown RBP11.71□□□□□ -0.53
LDLR-201ENST00000252444 METTL15P1P0C7V9 234 aa11.71□□□□□ -0.53
LDLR-201ENST00000252444 HTD2P86397 168 aa11.71□□□□□ -0.53
LDLR-201ENST00000252444 NHLRC3Q5JS37 347 aa11.71□□□□□ -0.53
LDLR-201ENST00000252444 C17orf107Q6ZR85 190 aa11.71□□□□□ -0.53
LDLR-201ENST00000252444 OR10AC1Q8NH08 325 aa11.71□□□□□ -0.53
LDLR-201ENST00000252444 OR4A5Q8NH83 315 aa11.71□□□□□ -0.53
LDLR-201ENST00000252444 MSL2Q9HCI7 577 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms