RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SURF2Q15527 256 aaPredicted RBP14.14□□□□□ -0.15
CLN3-252ENST00000636907 ZNF672Q499Z4 452 aaPredicted RBP14.14□□□□□ -0.15
CLN3-252ENST00000636907 FAM209AQ5JX71 171 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 FAHD2BQ6P2I3 314 aaPredicted RBP14.14□□□□□ -0.15
CLN3-252ENST00000636907 TGIF2LYQ8IUE0 185 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 OR11L1Q8NGX0 322 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 TMEM230Q96A57 120 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 FAHD2AQ96GK7 314 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 DHRS9Q9BPW9 319 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 FXYD6Q9H0Q3 95 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 DECR2Q9NUI1 292 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 PPP1R3CQ9UQK1 317 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 ANKHD1Q8IWZ3 2542 aaKnown RBP14.14□□□□□ -0.15
CLN3-252ENST00000636907 CACNA1DQ01668 2161 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 MEIKINA0A087WXM9 373 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 IGKV1-6A0A0C4DH72 117 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 POM121CA8CG34 1229 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 HLA-AP01891 365 aaKnown RBP14.14□□□□□ -0.15
CLN3-252ENST00000636907 PRB1P04280 392 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 PGAM2P15259 253 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 NFYAP23511 347 aaPredicted RBP14.14□□□□□ -0.15
CLN3-252ENST00000636907 ECI1P42126 302 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 GLP1RP43220 463 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 TAS2R31P59538 309 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 MOB1BQ7L9L4 216 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 LYG2Q86SG7 212 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 TMEM185AQ8NFB2 350 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 SHARPINQ9H0F6 387 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 SEBOXQ9HB31 216 aaPredicted RBP14.14□□□□□ -0.15
CLN3-252ENST00000636907 DYNLRB1Q9NP97 96 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 MGAT4CQ9UBM8 478 aa14.14□□□□□ -0.15
CLN3-252ENST00000636907 TMEM30CPA0ZSE6 113 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 C9orf170A2RU37 121 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 BET1O15155 118 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 GABRA2P47869 451 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 KCNJ3P48549 501 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 SEC61A1P61619 476 aaKnown RBP14.13□□□□□ -0.15
CLN3-252ENST00000636907 DHODHQ02127 395 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 SPICQ8N5J4 248 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 ASCC1Q8N9N2 400 aaKnown RBP14.13□□□□□ -0.15
CLN3-252ENST00000636907 FAM222BQ8WU58 562 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 COQ2Q96H96 371 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 EGLN1Q9GZT9 426 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 SAP30LQ9HAJ7 183 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 DCAF16Q9NXF7 216 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 SLC23A1Q9UHI7 598 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 TRAPPC2LQ9UL33 140 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 ROS1P08922 2347 aa14.13□□□□□ -0.15
CLN3-252ENST00000636907 ZNF737O75373 536 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 ANXA3P12429 323 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 IRF2P14316 349 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 AADACP22760 399 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 NKX2-5P52952 324 aaPredicted RBP14.12□□□□□ -0.15
CLN3-252ENST00000636907 FXYD4P59646 89 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 AESQ08117 197 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 SWI5Q1ZZU3 235 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 C2orf68Q2NKX9 166 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 ZFP69Q49AA0 526 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 SLC35E4Q6ICL7 350 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 MUC15Q8N387 334 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 C12orf45Q8N5I9 185 aaPredicted RBP14.12□□□□□ -0.15
CLN3-252ENST00000636907 UXS1Q8NBZ7 420 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 OR2AK2Q8NG84 335 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 OR4A4PQ8NGN8 299 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 TOMM40LQ969M1 308 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 MOB3AQ96BX8 217 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 MS4A5Q9H3V2 200 aa14.12□□□□□ -0.15
CLN3-252ENST00000636907 MBNL3Q9NUK0 354 aaKnown RBP14.12□□□□□ -0.15
CLN3-252ENST00000636907 SMLR1H3BR10 107 aa14.11□□□□□ -0.15
CLN3-252ENST00000636907 CTSDP07339 412 aaPredicted RBP14.11□□□□□ -0.15
CLN3-252ENST00000636907 CTXN2P0C2S0 81 aa14.11□□□□□ -0.15
CLN3-252ENST00000636907 ZNF728P0DKX0 622 aa14.11□□□□□ -0.15
CLN3-252ENST00000636907 VAMP1P23763 118 aa14.11□□□□□ -0.15
CLN3-252ENST00000636907 IL13RA1P78552 427 aa14.11□□□□□ -0.15
CLN3-252ENST00000636907 TMEM128Q5BJH2 165 aa14.11□□□□□ -0.15
CLN3-252ENST00000636907 ANGPTL6Q8NI99 470 aa14.11□□□□□ -0.15
CLN3-252ENST00000636907 ZNF436Q9C0F3 470 aaPredicted RBP14.11□□□□□ -0.15
CLN3-252ENST00000636907 KIF25Q9UIL4 384 aa14.11□□□□□ -0.15
CLN3-252ENST00000636907 MGAT4AQ9UM21 535 aa14.11□□□□□ -0.15
CLN3-252ENST00000636907 C14orf166Q9Y224 244 aaKnown RBP14.11□□□□□ -0.15
CLN3-252ENST00000636907 DYSFO75923 2080 aa14.11□□□□□ -0.15
CLN3-252ENST00000636907 B8ZZF3 427 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 C19orf84I3L1E1 186 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 PPYP01298 95 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 TK1P04183 234 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 KIRREL1Q96J84 757 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 CABLES2Q9BTV7 478 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 LRRC30A6NM36 301 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 GOSR2O14653 212 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 CD34P28906 385 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 HERV-K104P61576 105 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 SUPT4H1P63272 117 aaKnown RBP14.1□□□□□ -0.15
CLN3-252ENST00000636907 HMGN3Q15651 99 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 KRBOX4Q5JUW0 171 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 STUMQ69YW2 141 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 NLRC3Q7RTR2 1065 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 DEFB108BQ8NET1 73 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 ZFAND1Q8TCF1 268 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 CASTOR1Q8WTX7 329 aa14.1□□□□□ -0.15
CLN3-252ENST00000636907 MITD1Q8WV92 249 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms