RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 USB1Q9BQ65 265 aaKnown RBP18.66■□□□□ 0.58
PNKP-220ENST00000627232 DNAJB11Q9UBS4 358 aa18.66■□□□□ 0.58
PNKP-220ENST00000627232 FBXO9Q9UK97 447 aaPredicted RBP18.66■□□□□ 0.58
PNKP-220ENST00000627232 ZNF835Q9Y2P0 537 aa18.66■□□□□ 0.58
PNKP-220ENST00000627232 C3orf80F5H4A9 247 aa18.65■□□□□ 0.58
PNKP-220ENST00000627232 HAND1O96004 215 aa18.65■□□□□ 0.58
PNKP-220ENST00000627232 GLRXP35754 106 aa18.65■□□□□ 0.58
PNKP-220ENST00000627232 NUP62P37198 522 aaPredicted RBP18.65■□□□□ 0.58
PNKP-220ENST00000627232 RAB32Q13637 225 aa18.65■□□□□ 0.58
PNKP-220ENST00000627232 ESCO2Q56NI9 601 aa18.65■□□□□ 0.58
PNKP-220ENST00000627232 C6orf183Q5T699 404 aa18.65■□□□□ 0.58
PNKP-220ENST00000627232 PRR7Q8TB68 274 aa18.65■□□□□ 0.58
PNKP-220ENST00000627232 GLYATL2Q8WU03 294 aa18.65■□□□□ 0.58
PNKP-220ENST00000627232 SLC5A7Q9GZV3 580 aa18.65■□□□□ 0.58
PNKP-220ENST00000627232 FZR1Q9UM11 496 aa18.65■□□□□ 0.58
PNKP-220ENST00000627232 HEATR1Q9H583 2144 aaKnown RBP18.65■□□□□ 0.58
PNKP-220ENST00000627232 IGHV3-13P01766 116 aa18.64■□□□□ 0.58
PNKP-220ENST00000627232 CD200P41217 278 aa18.64■□□□□ 0.58
PNKP-220ENST00000627232 NKX6-1P78426 367 aaPredicted RBP18.64■□□□□ 0.58
PNKP-220ENST00000627232 SP6Q3SY56 376 aa18.64■□□□□ 0.58
PNKP-220ENST00000627232 ALKAL2Q6UX46 152 aa18.64■□□□□ 0.58
PNKP-220ENST00000627232 WDR82Q6UXN9 313 aa18.64■□□□□ 0.58
PNKP-220ENST00000627232 GFRALQ6UXV0 394 aa18.64■□□□□ 0.58
PNKP-220ENST00000627232 H1FOOQ8IZA3 346 aaPredicted RBP18.64■□□□□ 0.58
PNKP-220ENST00000627232 CITED4Q96RK1 184 aa18.64■□□□□ 0.58
PNKP-220ENST00000627232 MSL2Q9HCI7 577 aa18.64■□□□□ 0.58
PNKP-220ENST00000627232 GSKIPQ9P0R6 139 aa18.64■□□□□ 0.58
PNKP-220ENST00000627232 WIPI2Q9Y4P8 454 aa18.64■□□□□ 0.58
PNKP-220ENST00000627232 C3orf85A0A1B0GTC6 90 aa18.64■□□□□ 0.57
PNKP-220ENST00000627232 A6NLC8 198 aa18.64■□□□□ 0.57
PNKP-220ENST00000627232 SPDEFO95238 335 aa18.64■□□□□ 0.57
PNKP-220ENST00000627232 PTBP3O95758 552 aaKnown RBP18.64■□□□□ 0.57
PNKP-220ENST00000627232 RCC1P18754 421 aaPredicted RBP18.64■□□□□ 0.57
PNKP-220ENST00000627232 ACP7Q6ZNF0 438 aa18.64■□□□□ 0.57
PNKP-220ENST00000627232 C5orf24Q7Z6I8 188 aa18.64■□□□□ 0.57
PNKP-220ENST00000627232 OR10J5Q8NHC4 309 aa18.64■□□□□ 0.57
PNKP-220ENST00000627232 SECTM1Q8WVN6 248 aa18.64■□□□□ 0.57
PNKP-220ENST00000627232 PHYHIPLQ96FC7 376 aa18.64■□□□□ 0.57
PNKP-220ENST00000627232 CNTNAP3BQ96NU0 1288 aa18.64■□□□□ 0.57
PNKP-220ENST00000627232 AQP10Q96PS8 301 aa18.64■□□□□ 0.57
PNKP-220ENST00000627232 CNTNAP3Q9BZ76 1288 aa18.64■□□□□ 0.57
PNKP-220ENST00000627232 MBNL3Q9NUK0 354 aaKnown RBP18.64■□□□□ 0.57
PNKP-220ENST00000627232 ELOVL5Q9NYP7 299 aa18.64■□□□□ 0.57
PNKP-220ENST00000627232 TAAR3PQ9P1P4 343 aa18.64■□□□□ 0.57
PNKP-220ENST00000627232 A0A0G2JNJ9 132 aa18.63■□□□□ 0.57
PNKP-220ENST00000627232 PHF1O43189 567 aaPredicted RBP18.63■□□□□ 0.57
PNKP-220ENST00000627232 UCNP55089 124 aa18.63■□□□□ 0.57
PNKP-220ENST00000627232 TMPRSS3P57727 454 aa18.63■□□□□ 0.57
PNKP-220ENST00000627232 RPS23P62266 143 aaKnown RBP18.63■□□□□ 0.57
PNKP-220ENST00000627232 PRAMEF6Q5VXH4 476 aa18.63■□□□□ 0.57
PNKP-220ENST00000627232 ZNF826PQ6ZT77 177 aa18.63■□□□□ 0.57
PNKP-220ENST00000627232 KIRREL1Q96J84 757 aa18.63■□□□□ 0.57
PNKP-220ENST00000627232 MED9Q9NWA0 146 aa18.63■□□□□ 0.57
PNKP-220ENST00000627232 OR5AC2Q9NZP5 309 aa18.63■□□□□ 0.57
PNKP-220ENST00000627232 Q9UFV3 132 aa18.63■□□□□ 0.57
PNKP-220ENST00000627232 OR2W1Q9Y3N9 320 aa18.63■□□□□ 0.57
PNKP-220ENST00000627232 IGKV1D-13A0A0B4J2D9 117 aa18.62■□□□□ 0.57
PNKP-220ENST00000627232 IGHV3-64DA0A0J9YX35 117 aa18.62■□□□□ 0.57
PNKP-220ENST00000627232 IGKV1-13P0DP09 117 aa18.62■□□□□ 0.57
PNKP-220ENST00000627232 RRASP10301 218 aa18.62■□□□□ 0.57
PNKP-220ENST00000627232 BMP5P22003 454 aa18.62■□□□□ 0.57
PNKP-220ENST00000627232 BEX5Q5H9J7 111 aa18.62■□□□□ 0.57
PNKP-220ENST00000627232 ZNF818PQ6ZRF7 136 aa18.62■□□□□ 0.57
PNKP-220ENST00000627232 OR10Z1Q8NGY1 313 aa18.62■□□□□ 0.57
PNKP-220ENST00000627232 RRNAD1Q96FB5 475 aaKnown RBP18.62■□□□□ 0.57
PNKP-220ENST00000627232 ZNF471Q9BX82 626 aaPredicted RBP18.62■□□□□ 0.57
PNKP-220ENST00000627232 TMEM222Q9H0R3 208 aa18.62■□□□□ 0.57
PNKP-220ENST00000627232 ZFP57Q9NU63 452 aa18.62■□□□□ 0.57
PNKP-220ENST00000627232 TRAPPC2LQ9UL33 140 aa18.62■□□□□ 0.57
PNKP-220ENST00000627232 TMED3Q9Y3Q3 217 aa18.62■□□□□ 0.57
PNKP-220ENST00000627232 PTPRZ1P23471 2315 aaPredicted RBP18.61■□□□□ 0.57
PNKP-220ENST00000627232 AKAP13Q12802 2813 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 IFNL4K9M1U5 179 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 NMBP08949 121 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 FAM27E3Q08E93 113 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 SMCO1Q147U7 214 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 HMGN3Q15651 99 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 MSMPQ1L6U9 139 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 SMIM21Q3B7S5 101 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 SLC35E4Q6ICL7 350 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 TBC1D26Q86UD7 250 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 COMMD7Q86VX2 200 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 CMTM1Q8IZ96 169 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 OR1S1Q8NH92 325 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 TMEM56Q96MV1 263 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 TP53RKQ96S44 253 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 OR14J1Q9UGF5 321 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 TMEM56-RWDD3S4R434 201 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 CELSR3Q9NYQ7 3312 aa18.61■□□□□ 0.57
PNKP-220ENST00000627232 IGLV3-9A0A075B6K5 115 aa18.6■□□□□ 0.57
PNKP-220ENST00000627232 TMEM30CPA0ZSE6 113 aa18.6■□□□□ 0.57
PNKP-220ENST00000627232 RLN2P04090 185 aa18.6■□□□□ 0.57
PNKP-220ENST00000627232 WNT2P09544 360 aa18.6■□□□□ 0.57
PNKP-220ENST00000627232 S100GP29377 79 aa18.6■□□□□ 0.57
PNKP-220ENST00000627232 LUMP51884 338 aaPredicted RBP18.6■□□□□ 0.57
PNKP-220ENST00000627232 KLF3P57682 345 aaPredicted RBP18.6■□□□□ 0.57
PNKP-220ENST00000627232 S100A10P60903 97 aa18.6■□□□□ 0.57
PNKP-220ENST00000627232 LYZL2Q7Z4W2 148 aa18.6■□□□□ 0.57
PNKP-220ENST00000627232 STOML3Q8TAV4 291 aa18.6■□□□□ 0.57
PNKP-220ENST00000627232 PCNPQ8WW12 178 aaKnown RBP18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms