RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 DUX4L6P0CJ89 424 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 DUX4L7P0CJ90 424 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 ZDHHC22Q8N966 263 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 RIMS4Q9H426 269 aaPredicted RBP13.39□□□□□ -0.27
CPSF1-213ENST00000620219 MBD2Q9UBB5 411 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 DUX4Q9UBX2 424 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 SLC25A15Q9Y619 301 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 PVALBP20472 110 aaPredicted RBP13.38□□□□□ -0.27
CPSF1-213ENST00000620219 LUMP51884 338 aaPredicted RBP13.38□□□□□ -0.27
CPSF1-213ENST00000620219 LILRB4Q8NHJ6 448 aa13.38□□□□□ -0.27
CPSF1-213ENST00000620219 GALMQ96C23 342 aa13.38□□□□□ -0.27
CPSF1-213ENST00000620219 CYB5R3P00387 301 aaPredicted RBP13.38□□□□□ -0.27
CPSF1-213ENST00000620219 GLRXP35754 106 aa13.38□□□□□ -0.27
CPSF1-213ENST00000620219 CLEC18BQ6UXF7 455 aa13.38□□□□□ -0.27
CPSF1-213ENST00000620219 SLC36A1Q7Z2H8 476 aa13.38□□□□□ -0.27
CPSF1-213ENST00000620219 MRGPRGQ86SM5 289 aa13.38□□□□□ -0.27
CPSF1-213ENST00000620219 ZNF680Q8NEM1 530 aa13.38□□□□□ -0.27
CPSF1-213ENST00000620219 NOTCH2Q04721 2471 aa13.38□□□□□ -0.27
CPSF1-213ENST00000620219 CTXN2P0C2S0 81 aa13.38□□□□□ -0.27
CPSF1-213ENST00000620219 PET100P0DJ07 73 aa13.38□□□□□ -0.27
CPSF1-213ENST00000620219 COL10A1Q03692 680 aa13.38□□□□□ -0.27
CPSF1-213ENST00000620219 ZNF529Q6P280 563 aa13.38□□□□□ -0.27
CPSF1-213ENST00000620219 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.37□□□□□ -0.279e-10■■■□□ 17.2
CPSF1-213ENST00000620219 LAMTOR1Q6IAA8 161 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 SPSB4Q96A44 273 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 PPYP01298 95 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 OR5AC1P0C628 307 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 ZNF735P0CB33 412 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 S100A11P31949 105 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 EXOSC2Q13868 293 aaKnown RBP13.37□□□□□ -0.27
CPSF1-213ENST00000620219 HNF4GQ14541 408 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 LPCAT3Q6P1A2 487 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 MARS2Q96GW9 593 aaKnown RBP13.37□□□□□ -0.27
CPSF1-213ENST00000620219 COLCA1Q6ZS62 124 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 SEM1Q6ZVN7 128 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 CCL28Q9NRJ3 127 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 CISD1Q9NZ45 108 aaKnown RBP13.37□□□□□ -0.27
CPSF1-213ENST00000620219 NKX6-3A6NJ46 265 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 CD74P04233 296 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 TMUB2Q71RG4 321 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 ZNF767PQ75MW2 155 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 FAM185AQ8N0U4 392 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 LGI3Q8N145 548 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 MED30Q96HR3 178 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 BOD1Q96IK1 185 aa13.37□□□□□ -0.27
CPSF1-213ENST00000620219 PRH1P02810 166 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 TM2D1Q9BX74 207 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 MRPL37Q9BZE1 423 aaKnown RBP13.36□□□□□ -0.27
CPSF1-213ENST00000620219 MAGT1Q9H0U3 335 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 PKD1L2Q7Z442 2459 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 A0A0B4J2A0 478 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 TMEM210A6NLX4 147 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 TRDCB7Z8K6 153 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 MELTFP08582 738 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 DTYMKP23919 212 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 PRDX2P32119 198 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 SLC25A42Q86VD7 318 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 SPICQ8N5J4 248 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 RELL2Q8NC24 303 aaPredicted RBP13.36□□□□□ -0.27
CPSF1-213ENST00000620219 TCTEX1D2Q8WW35 142 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 C5orf66Q9H5L9 145 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 SHPKQ9UHJ6 478 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 ITGB1BP2Q9UKP3 347 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 ALX3O95076 343 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 PMELP40967 661 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 FAM74A1Q5RGS3 127 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 TMEM42Q69YG0 159 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 SSX9Q7RTT3 188 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 C1orf87Q8N0U7 546 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 CCL13Q99616 98 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 RNF7Q9UBF6 113 aa13.36□□□□□ -0.27
CPSF1-213ENST00000620219 SFTPCP11686 197 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 SIGIRRQ6IA17 410 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 ZNRF1Q8ND25 227 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 PKIBQ9C010 78 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 OR51I2Q9H344 312 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 GYPAP02724 150 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 IL24Q13007 206 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 A0A1B0GV50 99 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 IQCF6A8MYZ5 107 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 IGKV3-15P01624 115 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 COX5AP20674 150 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 HOXD11P31277 338 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-213ENST00000620219 ECI1P42126 302 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 GAPTQ8N292 157 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 HSF4Q9ULV5 492 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 PSG11Q9UQ72 335 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 WIPI2Q9Y4P8 454 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 ADAM20O43506 726 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 CXCL2P19875 107 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 SWI5Q1ZZU3 235 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 ELP2Q6IA86 826 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 LYPD6Q86Y78 171 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 WFIKKN1Q96NZ8 548 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 SLC2A9Q9NRM0 540 aa13.35□□□□□ -0.27
CPSF1-213ENST00000620219 SFT2D2O95562 160 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 GNG10P50151 68 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 OVCH2Q7RTZ1 564 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 FAM89BQ8N5H3 189 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 CLCC1Q96S66 551 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms