RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ADIPOR1Q96A54 375 aa9.37□□□□□ -0.91
UPF3A-212ENST00000619079 ZNF385AQ96PM9 386 aaKnown RBP9.37□□□□□ -0.91
UPF3A-212ENST00000619079 GAL3ST4Q96RP7 486 aa9.37□□□□□ -0.91
UPF3A-212ENST00000619079 IMMP2LQ96T52 175 aa9.37□□□□□ -0.91
UPF3A-212ENST00000619079 TMEM222Q9H0R3 208 aa9.37□□□□□ -0.91
UPF3A-212ENST00000619079 FAM60AQ9NP50 221 aa9.37□□□□□ -0.91
UPF3A-212ENST00000619079 PARD6AQ9NPB6 346 aa9.37□□□□□ -0.91
UPF3A-212ENST00000619079 CHST11Q9NPF2 352 aa9.37□□□□□ -0.91
UPF3A-212ENST00000619079 MED29Q9NX70 200 aa9.37□□□□□ -0.91
UPF3A-212ENST00000619079 PRSS50Q9UI38 385 aa9.37□□□□□ -0.91
UPF3A-212ENST00000619079 VDAC3Q9Y277 283 aa9.37□□□□□ -0.91
UPF3A-212ENST00000619079 POLR3KQ9Y2Y1 108 aaPredicted RBP9.37□□□□□ -0.91
UPF3A-212ENST00000619079 PI4KAP42356 2102 aa9.37□□□□□ -0.91
UPF3A-212ENST00000619079 OTOGLQ3ZCN5 2332 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 C3orf85A0A1B0GTC6 90 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 ONECUT2O95948 504 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 FCGR2AP12318 317 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 PLCXD2Q0VAA5 305 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 ADIRFQ15847 76 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 MPV17LQ2QL34 196 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 BSXQ3C1V8 233 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 WDR25Q64LD2 544 aaPredicted RBP9.36□□□□□ -0.91
UPF3A-212ENST00000619079 SLC25A24Q6NUK1 477 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 FAM57BQ71RH2 274 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 CPEB2Q7Z5Q1 589 aaKnown RBP9.36□□□□□ -0.91
UPF3A-212ENST00000619079 ZNF695Q8IW36 515 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 D2HGDHQ8N465 521 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 C10orf35Q96D05 121 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 SMIM7Q9BQ49 75 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 C20orf144Q9BQM9 153 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 HDHD3Q9BSH5 251 aaPredicted RBP9.36□□□□□ -0.91
UPF3A-212ENST00000619079 RIF1Q5UIP0 2472 aaKnown RBP9.36□□□□□ -0.91
UPF3A-212ENST00000619079 TMEM131Q92545 1883 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 CLEC18AA5D8T8 446 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 TSPAN2O60636 221 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 CST7O76096 145 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 CNN1P51911 297 aaKnown RBP9.36□□□□□ -0.91
UPF3A-212ENST00000619079 BIDP55957 195 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 ARSJQ5FYB0 599 aaPredicted RBP9.36□□□□□ -0.91
UPF3A-212ENST00000619079 TMEM217Q8N7C4 229 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 CLEC18CQ8NCF0 446 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 ANAPC16Q96DE5 110 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 THOC3Q96J01 351 aaKnown RBP9.36□□□□□ -0.91
UPF3A-212ENST00000619079 TMEM56Q96MV1 263 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 LRRC61Q9BV99 259 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 ZNF286AQ9HBT8 521 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 TMEM9BQ9NQ34 198 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 PNO1Q9NRX1 252 aaKnown RBP9.36□□□□□ -0.91
UPF3A-212ENST00000619079 SEMA5BQ9P283 1151 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 TMEM56-RWDD3S4R434 201 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 CACNA1EQ15878 2313 aa9.36□□□□□ -0.91
UPF3A-212ENST00000619079 PIGBOS1A0A0B4J2F0 54 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 MPPED1O15442 326 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 WISP1O95388 367 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 HPRT1P00492 218 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 IL11P20809 199 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 SRP14P37108 136 aaKnown RBP9.35□□□□□ -0.91
UPF3A-212ENST00000619079 ZNF41P51814 821 aaPredicted RBP9.35□□□□□ -0.91
UPF3A-212ENST00000619079 SAPCD1Q5SSQ6 148 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 ST8SIA1Q92185 356 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 MMABQ96EY8 250 aaPredicted RBP9.35□□□□□ -0.91
UPF3A-212ENST00000619079 TP53RKQ96S44 253 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 MIEN1Q9BRT3 115 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 OR51I2Q9H344 312 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 ZNF665Q9H7R5 613 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 LPAR2Q9HBW0 351 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 ZNF319Q9P2F9 582 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 FUT9Q9Y231 359 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 UBE2J1Q9Y385 318 aaPredicted RBP9.35□□□□□ -0.91
UPF3A-212ENST00000619079 SPEGQ15772 3267 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 PTPRZ1P23471 2315 aaPredicted RBP9.35□□□□□ -0.91
UPF3A-212ENST00000619079 TNRC6BQ9UPQ9 1833 aaKnown RBP9.35□□□□□ -0.91
UPF3A-212ENST00000619079 A0A1W2PNV4 684 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 MAP1LC3B2A6NCE7 125 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 CEBPZOSA8MTT3 80 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 GDF9O60383 454 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 DHRS3O75911 302 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 PIAS2O75928 621 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 KBTBD11O94819 623 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 CTSBP07858 339 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 CELA2BP08218 269 aaPredicted RBP9.35□□□□□ -0.91
UPF3A-212ENST00000619079 GLI4P10075 376 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 EPHA8P29322 1005 aaPredicted RBP9.35□□□□□ -0.91
UPF3A-212ENST00000619079 ELLP55199 621 aaPredicted RBP9.35□□□□□ -0.91
UPF3A-212ENST00000619079 CLRN1P58418 232 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 ERVS71-1P61550 626 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 LCN2P80188 198 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 ID3Q02535 119 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 OR8B8Q15620 311 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 KCNMB1Q16558 191 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 DEFB133Q30KQ1 61 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 KCNIP4Q6PIL6 250 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 CRIP3Q6Q6R5 217 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 ZNF321PQ8N8H1 164 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 OR2T10Q8NGZ9 312 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 SCGB1C1Q8TD33 95 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 TMEM37Q8WXS4 190 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 PGAM5Q96HS1 289 aa9.35□□□□□ -0.91
UPF3A-212ENST00000619079 ZNF845Q96IR2 970 aaPredicted RBP9.35□□□□□ -0.91
UPF3A-212ENST00000619079 PSMG3Q9BT73 122 aaPredicted RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms