RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 PAX2Q02962 417 aa11.24□□□□□ -0.61
VMP1-210ENST00000589823 TMEM69Q5SWH9 247 aa11.24□□□□□ -0.61
VMP1-210ENST00000589823 TMEM200BQ69YZ2 307 aa11.24□□□□□ -0.61
VMP1-210ENST00000589823 FAHD2BQ6P2I3 314 aaPredicted RBP11.24□□□□□ -0.61
VMP1-210ENST00000589823 RTN4RL2Q86UN3 420 aa11.24□□□□□ -0.61
VMP1-210ENST00000589823 ZNF565Q8N9K5 539 aa11.24□□□□□ -0.61
VMP1-210ENST00000589823 DYRK2Q92630 601 aa11.24□□□□□ -0.61
VMP1-210ENST00000589823 FAHD2AQ96GK7 314 aa11.24□□□□□ -0.61
VMP1-210ENST00000589823 CMSS1Q9BQ75 279 aaKnown RBP11.24□□□□□ -0.61
VMP1-210ENST00000589823 NXF2Q9GZY0 626 aaKnown RBP11.24□□□□□ -0.61
VMP1-210ENST00000589823 MMP27Q9H306 513 aa11.24□□□□□ -0.61
VMP1-210ENST00000589823 RIMS4Q9H426 269 aaPredicted RBP11.24□□□□□ -0.61
VMP1-210ENST00000589823 ZMAT3Q9HA38 289 aaKnown RBP11.24□□□□□ -0.61
VMP1-210ENST00000589823 KCNS2Q9ULS6 477 aa11.24□□□□□ -0.61
VMP1-210ENST00000589823 UBE2J1Q9Y385 318 aaPredicted RBP11.24□□□□□ -0.61
VMP1-210ENST00000589823 INSIG2Q9Y5U4 225 aa11.24□□□□□ -0.61
VMP1-210ENST00000589823 A3GALT2U3KPV4 340 aa11.24□□□□□ -0.61
VMP1-210ENST00000589823 hCG_1809904A0A1W2PP81 198 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 A0A1W2PPE2 198 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 A0A1W2PR64 198 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 A0A1W2PRV1 198 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 MEX3AA1L020 520 aaKnown RBP11.23□□□□□ -0.61
VMP1-210ENST00000589823 MT-ND4P03905 459 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 S100A5P33763 92 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 ARF6P62330 175 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 ARFRP1Q13795 201 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 ZNF273Q14593 569 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 ZNF260Q3ZCT1 412 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 LAX1Q8IWV1 398 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 GAPTQ8N292 157 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 KIR3DL3Q8N743 410 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 OR4K15Q8NH41 348 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 CCDC107Q8WV48 283 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 CORO2AQ92828 525 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 DACT3Q96B18 629 aaPredicted RBP11.23□□□□□ -0.61
VMP1-210ENST00000589823 ZNF714Q96N38 554 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 MIXL1Q9H2W2 232 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 GAL3ST2Q9H3Q3 398 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 C12orf4Q9NQ89 552 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.23□□□□□ -0.61
VMP1-210ENST00000589823 TAS2R3Q9NYW6 316 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 EXTL2Q9UBQ6 330 aa11.23□□□□□ -0.61
VMP1-210ENST00000589823 J3QLI3 93 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 M0R1W7 72 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 GZMHP20718 246 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 TAS2R20P59543 309 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 GNG2P59768 71 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 PITPNAQ00169 270 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 KRTAP1-1Q07627 177 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 PNLIPRP3Q17RR3 467 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 C6orf183Q5T699 404 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 METTL11BQ5VVY1 283 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 HACD4Q5VWC8 232 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 OLFML2AQ68BL7 652 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 TRAT1Q6PIZ9 186 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 CLEC9AQ6UXN8 241 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 IZUMO1Q8IYV9 350 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 DTX3Q8N9I9 347 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 SETD6Q8TBK2 473 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 MRGPRDQ8TDS7 321 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 CYYR1Q96J86 154 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 SMR3AQ99954 134 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 C7orf69Q9H7B7 122 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 YAE1D1Q9NRH1 226 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 KCNIP1Q9NZI2 227 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 MRPS7Q9Y2R9 242 aaKnown RBP11.22□□□□□ -0.61
VMP1-210ENST00000589823 KCNK7Q9Y2U2 307 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 KPTNQ9Y664 436 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 AUP1Q9Y679 476 aa11.22□□□□□ -0.61
VMP1-210ENST00000589823 ABCA2Q9BZC7 2435 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 MED13LQ71F56 2210 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 DOCK11Q5JSL3 2073 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 YLPM1P49750 1951 aaKnown RBP11.21□□□□□ -0.61
VMP1-210ENST00000589823 TMEM235A6NFC5 223 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 ZNF729A6NN14 1252 aaPredicted RBP11.21□□□□□ -0.61
VMP1-210ENST00000589823 CLPXO76031 633 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 TOX4O94842 621 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 LY6G6DO95868 133 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 ZNF728P0DKX0 622 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 CCL3L1P16619 93 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 PAX8Q06710 450 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 CNPY1Q3B7I2 92 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 MOB1BQ7L9L4 216 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 TCF23Q7RTU1 214 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 OR13A1Q8NGR1 328 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 MRPL30Q8TCC3 161 aaKnown RBP11.21□□□□□ -0.61
VMP1-210ENST00000589823 DIRAS2Q96HU8 199 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 WDFY2Q96P53 400 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 HDHD3Q9BSH5 251 aaPredicted RBP11.21□□□□□ -0.61
VMP1-210ENST00000589823 AUNIPQ9H7T9 357 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 RAB9BQ9NP90 201 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 MGAT4AQ9UM21 535 aa11.21□□□□□ -0.61
VMP1-210ENST00000589823 TRBV6-6A0A0A6YYG2 114 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 TRAV39A0A0B4J263 110 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 POM121CA8CG34 1229 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 A8MV72 311 aaPredicted RBP11.2□□□□□ -0.62
VMP1-210ENST00000589823 NAPSAO96009 420 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 RBP4P02753 201 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 MELTFP08582 738 aa11.2□□□□□ -0.62
VMP1-210ENST00000589823 CR1LQ2VPA4 569 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms