RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 GSTZ1O43708 216 aaPredicted RBP3.79□□□□□ -1.8
SS18-223ENST00000583595 CREBL2O60519 120 aaPredicted RBP3.79□□□□□ -1.8
SS18-223ENST00000583595 FARS2O95363 451 aaKnown RBP3.79□□□□□ -1.8
SS18-223ENST00000583595 IGF2P01344 180 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 PMP2P02689 132 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 FABP3P05413 133 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 CFC1BP0CG36 223 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 CFC1P0CG37 223 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 CD79AP11912 226 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 DTYMKP23919 212 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 NFYBP25208 207 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 HTR2CP28335 458 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 TEAD1P28347 426 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 MIPP30301 263 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 NPBWR2P48146 333 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 CTBP2P56545 445 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 WNT4P56705 351 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 KLF3P57682 345 aaPredicted RBP3.79□□□□□ -1.8
SS18-223ENST00000583595 MTPNP58546 118 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 CDC42P60953 191 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 TPBGQ13641 420 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 GGTLC2Q14390 218 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 SNRNP35Q16560 246 aaKnown RBP3.79□□□□□ -1.8
SS18-223ENST00000583595 ZNF678Q5SXM1 525 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 OR10K2Q6IF99 312 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 ZNF613Q6PF04 617 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 DUX4L9Q6RFH8 374 aaPredicted RBP3.79□□□□□ -1.8
SS18-223ENST00000583595 CYHR1Q6ZMK1 362 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 Q6ZN92 141 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 TMEM91Q6ZNR0 172 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 ZNF621Q6ZSS3 439 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 HIST2H3AQ71DI3 136 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 OR2W3Q7Z3T1 314 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 C6orf120Q7Z4R8 191 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 TMEM135Q86UB9 458 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 THOC6Q86W42 341 aaKnown RBP3.79□□□□□ -1.8
SS18-223ENST00000583595 UNC93AQ86WB7 457 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 CALHM3Q86XJ0 350 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 RBM45Q8IUH3 476 aaKnown RBP3.79□□□□□ -1.8
SS18-223ENST00000583595 APRG1Q8IVJ8 170 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 BAP18Q8IXM2 172 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 ABHD12Q8N2K0 398 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 ACBD7Q8N6N7 88 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 ACBD4Q8NC06 268 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 OR4C6Q8NH72 309 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 CXorf40AQ8TE69 158 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 SMARCD2Q92925 531 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 POM121L2Q96KW2 1035 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 NRIP2Q9BQI9 281 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 UTP23Q9BRU9 249 aaKnown RBP3.79□□□□□ -1.8
SS18-223ENST00000583595 ADAT1Q9BUB4 502 aaKnown RBP3.79□□□□□ -1.8
SS18-223ENST00000583595 ZNF426Q9BUY5 554 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 POLR2J2Q9GZM3 115 aaKnown RBP3.79□□□□□ -1.8
SS18-223ENST00000583595 RAB1BQ9H0U4 201 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 C20orf85Q9H1P6 137 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 ASF1BQ9NVP2 202 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 RBM22Q9NW64 420 aaKnown RBP eCLIP3.79□□□□□ -1.8
SS18-223ENST00000583595 C1orf109Q9NX04 203 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 ZNF256Q9Y2P7 627 aaPredicted RBP3.79□□□□□ -1.8
SS18-223ENST00000583595 STYXL1Q9Y6J8 313 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 V9GYS6 101 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 SCN9AQ15858 1988 aa3.79□□□□□ -1.8
SS18-223ENST00000583595 TCF20Q9UGU0 1960 aaKnown RBP3.79□□□□□ -1.8
SS18-223ENST00000583595 ZNF638Q14966 1978 aaKnown RBP3.78□□□□□ -1.8
SS18-223ENST00000583595 RAI1Q7Z5J4 1906 aaPredicted RBP3.78□□□□□ -1.8
SS18-223ENST00000583595 FXYD6-FXYD2A0A087WZ82 144 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 TMEM269A0A1B0GVZ9 245 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 OR5H1A6NKK0 313 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 DHRS7CA6NNS2 312 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 F5H5P2 479 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 MFNGO00587 321 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 UBFD1O14562 309 aaKnown RBP3.78□□□□□ -1.8
SS18-223ENST00000583595 MRPS12O15235 138 aaKnown RBP3.78□□□□□ -1.8
SS18-223ENST00000583595 TGOLN2O43493 480 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 BCL2L11O43521 198 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 TCF21O43680 179 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 HSBP1O75506 76 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 YIF1AO95070 293 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 SEMG1P04279 462 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 IGLL1P15814 213 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 TBPP20226 339 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 HSD11B1P28845 292 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 NDUFA6P56556 154 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 PRPS1P60891 318 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 SNRPGP62308 76 aaKnown RBP3.78□□□□□ -1.8
SS18-223ENST00000583595 SELENOTP62341 195 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 CRADDP78560 199 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 BCL2L1Q07817 233 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 OR2F1Q13607 317 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 ZNF345Q14585 488 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 JOSD1Q15040 202 aaPredicted RBP3.78□□□□□ -1.8
SS18-223ENST00000583595 ATP6V1FQ16864 119 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 RPEL1Q2QD12 228 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 C18orf21Q32NC0 220 aaPredicted RBP3.78□□□□□ -1.8
SS18-223ENST00000583595 SLC36A2Q495M3 483 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 ACTBL2Q562R1 376 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 KLF17Q5JT82 389 aaPredicted RBP3.78□□□□□ -1.8
SS18-223ENST00000583595 CLEC6AQ6EIG7 209 aa3.78□□□□□ -1.8
SS18-223ENST00000583595 APOBEC3HQ6NTF7 200 aaKnown RBP3.78□□□□□ -1.8
SS18-223ENST00000583595 CD200R1LQ6Q8B3 271 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms