RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 ADAM30Q9UKF2 790 aa14.08□□□□□ -0.15
NUP88-210ENST00000574867 KPTNQ9Y664 436 aa14.08□□□□□ -0.15
NUP88-210ENST00000574867 A3GALT2U3KPV4 340 aa14.08□□□□□ -0.15
NUP88-210ENST00000574867 ARHGAP32A7KAX9 2087 aa14.08□□□□□ -0.16
NUP88-210ENST00000574867 M0R1W7 72 aa14.08□□□□□ -0.16
NUP88-210ENST00000574867 HPGDSO60760 199 aa14.08□□□□□ -0.16
NUP88-210ENST00000574867 EIF4EP06730 217 aaKnown RBP14.08□□□□□ -0.16
NUP88-210ENST00000574867 GSTP1P09211 210 aaKnown RBP14.08□□□□□ -0.16
NUP88-210ENST00000574867 CDK2P24941 298 aa14.08□□□□□ -0.16
NUP88-210ENST00000574867 ZNF273Q14593 569 aa14.08□□□□□ -0.16
NUP88-210ENST00000574867 CLEC9AQ6UXN8 241 aa14.08□□□□□ -0.16
NUP88-210ENST00000574867 TCF23Q7RTU1 214 aa14.08□□□□□ -0.16
NUP88-210ENST00000574867 TRAPPC6BQ86SZ2 158 aa14.08□□□□□ -0.16
NUP88-210ENST00000574867 CORO2AQ92828 525 aa14.08□□□□□ -0.16
NUP88-210ENST00000574867 ZNF714Q96N38 554 aa14.08□□□□□ -0.16
NUP88-210ENST00000574867 C6orf62Q9GZU0 229 aaPredicted RBP14.08□□□□□ -0.16
NUP88-210ENST00000574867 C12orf4Q9NQ89 552 aa14.08□□□□□ -0.16
NUP88-210ENST00000574867 ONECUT1Q9UBC0 465 aa14.08□□□□□ -0.16
NUP88-210ENST00000574867 POM121CA8CG34 1229 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 RGS5O15539 181 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 XRCC3O43542 346 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 LY6G6DO95868 133 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 MT-ND4P03905 459 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 MRPS15P82914 257 aaKnown RBP14.07□□□□□ -0.16
NUP88-210ENST00000574867 PAX8Q06710 450 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 METTL11BQ5VVY1 283 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 FAHD2BQ6P2I3 314 aaPredicted RBP14.07□□□□□ -0.16
NUP88-210ENST00000574867 ZNF565Q8N9K5 539 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 DYRK2Q92630 601 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 FAHD2AQ96GK7 314 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 GAL3ST2Q9H3Q3 398 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 TAS2R3Q9NYW6 316 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 AK3Q9UIJ7 227 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 KCNK7Q9Y2U2 307 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 F8P00451 2351 aa14.07□□□□□ -0.16
NUP88-210ENST00000574867 hCG_1809904A0A1W2PP81 198 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 A0A1W2PPE2 198 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 A0A1W2PR64 198 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 A0A1W2PRV1 198 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 RBP4P02753 201 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 GNB3P16520 340 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 GLP1RP43220 463 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 TMEM69Q5SWH9 247 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 TRAT1Q6PIZ9 186 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 C1orf122Q6ZSJ8 110 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 RTN4RL2Q86UN3 420 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 SMR3AQ99954 134 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 MMP27Q9H306 513 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 CSPG4Q6UVK1 2322 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 A8MV72 311 aaPredicted RBP14.06□□□□□ -0.16
NUP88-210ENST00000574867 FAM25AB3EWG3 89 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 FAM25CB3EWG5 89 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 FAM25GB3EWG6 89 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 NAPSAO96009 420 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 CD3GP09693 182 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 ZNF728P0DKX0 622 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 ELK1P19419 428 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 CDNFQ49AH0 187 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 MOB1BQ7L9L4 216 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 MRPL30Q8TCC3 161 aaKnown RBP14.06□□□□□ -0.16
NUP88-210ENST00000574867 CMSS1Q9BQ75 279 aaKnown RBP14.06□□□□□ -0.16
NUP88-210ENST00000574867 TMPRSS13Q9BYE2 586 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 C7orf69Q9H7B7 122 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 CHMP1AQ9HD42 196 aaPredicted RBP14.06□□□□□ -0.16
NUP88-210ENST00000574867 YAE1D1Q9NRH1 226 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 TRAPPC2LQ9UL33 140 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 AUP1Q9Y679 476 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 WNK2Q9Y3S1 2297 aa14.06□□□□□ -0.16
NUP88-210ENST00000574867 TRAV18A0A075B6X5 111 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 TRBV6-6A0A0A6YYG2 114 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 ZNF729A6NN14 1252 aaPredicted RBP14.05□□□□□ -0.16
NUP88-210ENST00000574867 CCL3L1P16619 93 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 TALDO1P37837 337 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 ARF6P62330 175 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 PNLIPRP3Q17RR3 467 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 CR1LQ2VPA4 569 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 ZNF260Q3ZCT1 412 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 C6orf183Q5T699 404 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 TEX29Q8N6K0 151 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 OR13A1Q8NGR1 328 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 WDFY2Q96P53 400 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 SIRPDQ9H106 197 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 ZMAT3Q9HA38 289 aaKnown RBP14.05□□□□□ -0.16
NUP88-210ENST00000574867 TMEM160Q9NX00 188 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 OPN4Q9UHM6 478 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 CTDSP2O14595 271 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 GZMHP20718 246 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 DLX6P56179 175 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 PITPNAQ00169 270 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 HACD4Q5VWC8 232 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 OLFML2AQ68BL7 652 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 ZNF554Q86TJ5 538 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 LAX1Q8IWV1 398 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 OR4K15Q8NH41 348 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 CYYR1Q96J86 154 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 METTL8Q9H825 291 aaKnown RBP14.05□□□□□ -0.16
NUP88-210ENST00000574867 RAB9BQ9NP90 201 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 MBNL3Q9NUK0 354 aaKnown RBP14.05□□□□□ -0.16
NUP88-210ENST00000574867 MGAT4AQ9UM21 535 aa14.05□□□□□ -0.16
NUP88-210ENST00000574867 TMEM235A6NFC5 223 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms