RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 GON7Q9BXV9 100 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 BARHL1Q9BZE3 327 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 ZCCHC4Q9H5U6 513 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 SORL1Q92673 2214 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 HSPB6O14558 160 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 GYG2O15488 501 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 ELANEP08246 267 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 TMEM225BP0DP42 221 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 GNG10P50151 68 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 FOXE3Q13461 319 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 GPR50Q13585 617 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 ATP6AP1Q15904 470 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 LTC4SQ16873 150 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 DNAL1Q4LDG9 190 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 PAN3Q58A45 887 aaKnown RBP13.79□□□□□ -0.2
CLK3-221ENST00000568139 CXorf66Q5JRM2 361 aaPredicted RBP13.79□□□□□ -0.2
CLK3-221ENST00000568139 RSBN1Q5VWQ0 802 aaPredicted RBP13.79□□□□□ -0.2
CLK3-221ENST00000568139 ELP2Q6IA86 826 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 ZDHHC13Q8IUH4 622 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 Q8N6K4 173 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 Q8N9W7 124 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 OR10X1Q8NGY0 326 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 RFESDQ8TAC1 157 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 CNIH3Q8TBE1 160 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 RFKQ969G6 155 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 CIB1Q99828 191 aa13.79□□□□□ -0.2
CLK3-221ENST00000568139 LIN7CQ9NUP9 197 aaKnown RBP13.79□□□□□ -0.2
CLK3-221ENST00000568139 IGHV1-3A0A0C4DH29 117 aa13.78□□□□□ -0.2
CLK3-221ENST00000568139 OR4C45A6NMZ5 311 aa13.78□□□□□ -0.2
CLK3-221ENST00000568139 NCBP2LA6PVI3 153 aaKnown RBP13.78□□□□□ -0.2
CLK3-221ENST00000568139 SEC14L6B5MCN3 397 aa13.78□□□□□ -0.2
CLK3-221ENST00000568139 J3QRE1 110 aa13.78□□□□□ -0.2
CLK3-221ENST00000568139 HSD17B6O14756 317 aa13.78□□□□□ -0.2
CLK3-221ENST00000568139 GAPDHP04406 335 aaKnown RBP13.78□□□□□ -0.2
CLK3-221ENST00000568139 HTR1AP08908 422 aa13.78□□□□□ -0.2
CLK3-221ENST00000568139 KISS1Q15726 138 aa13.78□□□□□ -0.2
CLK3-221ENST00000568139 IZUMO1Q8IYV9 350 aa13.78□□□□□ -0.2
CLK3-221ENST00000568139 PLPPR1Q8TBJ4 325 aa13.78□□□□□ -0.2
CLK3-221ENST00000568139 MRGPRDQ8TDS7 321 aa13.78□□□□□ -0.2
CLK3-221ENST00000568139 SIRT4Q9Y6E7 314 aaPredicted RBP13.78□□□□□ -0.2
CLK3-221ENST00000568139 A0A1W2PPE3 182 aa13.77□□□□□ -0.21
CLK3-221ENST00000568139 CCRL2O00421 344 aa13.77□□□□□ -0.21
CLK3-221ENST00000568139 SLC16A6O15403 523 aa13.77□□□□□ -0.21
CLK3-221ENST00000568139 MPZL2O60487 215 aa13.77□□□□□ -0.21
CLK3-221ENST00000568139 SSTR5P35346 364 aa13.77□□□□□ -0.21
CLK3-221ENST00000568139 KCNJ3P48549 501 aa13.77□□□□□ -0.21
CLK3-221ENST00000568139 FHL3Q13643 280 aa13.77□□□□□ -0.21
CLK3-221ENST00000568139 CASC10Q5T4H9 136 aa13.77□□□□□ -0.21
CLK3-221ENST00000568139 MOB3BQ86TA1 216 aa13.77□□□□□ -0.21
CLK3-221ENST00000568139 PXT1Q8NFP0 134 aa13.77□□□□□ -0.21
CLK3-221ENST00000568139 OR2T10Q8NGZ9 312 aa13.77□□□□□ -0.21
CLK3-221ENST00000568139 MUC7Q8TAX7 377 aa13.77□□□□□ -0.21
CLK3-221ENST00000568139 NR1H4Q96RI1 486 aaPredicted RBP13.77□□□□□ -0.21
CLK3-221ENST00000568139 GABARAPL3Q9BY60 117 aa13.77□□□□□ -0.21
CLK3-221ENST00000568139 PLSCR3Q9NRY6 295 aa13.77□□□□□ -0.21
CLK3-221ENST00000568139 ZNF256Q9Y2P7 627 aaPredicted RBP13.77□□□□□ -0.21
CLK3-221ENST00000568139 TENM2Q9NT68 2774 aa13.76□□□□□ -0.21
CLK3-221ENST00000568139 IGHV3-72A0A0B4J1Y9 119 aa13.76□□□□□ -0.21
CLK3-221ENST00000568139 DAPL1A0PJW8 107 aa13.76□□□□□ -0.21
CLK3-221ENST00000568139 SULT1B1O43704 296 aa13.76□□□□□ -0.21
CLK3-221ENST00000568139 HCKP08631 526 aa13.76□□□□□ -0.21
CLK3-221ENST00000568139 CFHR3Q02985 330 aa13.76□□□□□ -0.21
CLK3-221ENST00000568139 ALKBH1Q13686 389 aaKnown RBP13.76□□□□□ -0.21
CLK3-221ENST00000568139 IL13RA2Q14627 380 aa13.76□□□□□ -0.21
CLK3-221ENST00000568139 ZNF691Q5VV52 312 aa13.76□□□□□ -0.21
CLK3-221ENST00000568139 Q8NFD4 153 aa13.76□□□□□ -0.21
CLK3-221ENST00000568139 OR5D14Q8NGL3 314 aa13.76□□□□□ -0.21
CLK3-221ENST00000568139 C4orf3Q8WVX3 66 aa13.76□□□□□ -0.21
CLK3-221ENST00000568139 SLC7A6OSQ96CW6 309 aaPredicted RBP13.76□□□□□ -0.21
CLK3-221ENST00000568139 PELI1Q96FA3 418 aa13.76□□□□□ -0.21
CLK3-221ENST00000568139 IGHG4P01861 327 aa13.75□□□□□ -0.21
CLK3-221ENST00000568139 FASP25445 335 aa13.75□□□□□ -0.21
CLK3-221ENST00000568139 CD1BP29016 333 aa13.75□□□□□ -0.21
CLK3-221ENST00000568139 REG1BP48304 166 aa13.75□□□□□ -0.21
CLK3-221ENST00000568139 ZNF260Q3ZCT1 412 aa13.75□□□□□ -0.21
CLK3-221ENST00000568139 AMIGO2Q86SJ2 522 aa13.75□□□□□ -0.21
CLK3-221ENST00000568139 SERPINA12Q8IW75 414 aa13.75□□□□□ -0.21
CLK3-221ENST00000568139 PARP16Q8N5Y8 322 aa13.75□□□□□ -0.21
CLK3-221ENST00000568139 LINC00311Q8N616 119 aa13.75□□□□□ -0.21
CLK3-221ENST00000568139 TMEM104Q8NE00 496 aa13.75□□□□□ -0.21
CLK3-221ENST00000568139 RIBC2Q9H4K1 309 aa13.75□□□□□ -0.21
CLK3-221ENST00000568139 TRAV39A0A0B4J263 110 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 J3QLW9 94 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 RRP9O43818 475 aaKnown RBP13.74□□□□□ -0.21
CLK3-221ENST00000568139 ZNF19P17023 458 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 GZMHP20718 246 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 PSMB8P28062 276 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 ZSCAN26Q16670 478 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 C8orf31Q8N9H6 132 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 OR52M1Q8NGK5 317 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 TRUB1Q8WWH5 349 aaKnown RBP13.74□□□□□ -0.21
CLK3-221ENST00000568139 ST6GALNAC6Q969X2 333 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 C4orf36Q96KX1 117 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 S1PR3Q99500 378 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 RASL11BQ9BPW5 248 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 FAM118AQ9NWS6 357 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 ZNF580Q9UK33 172 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 SMAD5-AS1Q9Y6J3 95 aa13.74□□□□□ -0.21
CLK3-221ENST00000568139 MOSP00540 346 aa13.73□□□□□ -0.21
CLK3-221ENST00000568139 INSL3P51460 131 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms