RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 Q8NFD4 153 aa11.52□□□□□ -0.56
CLK3-206ENST00000562078 OR52M1Q8NGK5 317 aa11.52□□□□□ -0.56
CLK3-206ENST00000562078 MS4A10Q96PG2 267 aa11.52□□□□□ -0.56
CLK3-206ENST00000562078 PCGF1Q9BSM1 259 aa11.52□□□□□ -0.56
CLK3-206ENST00000562078 ALKBH7Q9BT30 221 aaPredicted RBP11.52□□□□□ -0.56
CLK3-206ENST00000562078 SDF2L1Q9HCN8 221 aa11.52□□□□□ -0.56
CLK3-206ENST00000562078 OCIAD1Q9NX40 245 aa11.52□□□□□ -0.56
CLK3-206ENST00000562078 GNG13Q9P2W3 67 aa11.52□□□□□ -0.56
CLK3-206ENST00000562078 ANAPC10Q9UM13 185 aa11.52□□□□□ -0.56
CLK3-206ENST00000562078 CDX4O14627 284 aaPredicted RBP11.52□□□□□ -0.57
CLK3-206ENST00000562078 NUPR1O60356 82 aa11.52□□□□□ -0.57
CLK3-206ENST00000562078 CSNK2A1P68400 391 aaPredicted RBP11.52□□□□□ -0.57
CLK3-206ENST00000562078 PNRC1Q12796 327 aaPredicted RBP11.52□□□□□ -0.57
CLK3-206ENST00000562078 MMDQ15546 238 aa11.52□□□□□ -0.57
CLK3-206ENST00000562078 TMEM256Q8N2U0 113 aa11.52□□□□□ -0.57
CLK3-206ENST00000562078 IL22RA1Q8N6P7 574 aa11.52□□□□□ -0.57
CLK3-206ENST00000562078 CSNK2A3Q8NEV1 391 aa11.52□□□□□ -0.57
CLK3-206ENST00000562078 OR8G5Q8NG78 346 aa11.52□□□□□ -0.57
CLK3-206ENST00000562078 OR14L1PQ8NHC6 308 aa11.52□□□□□ -0.57
CLK3-206ENST00000562078 IL22RA2Q969J5 263 aa11.52□□□□□ -0.57
CLK3-206ENST00000562078 C20orf144Q9BQM9 153 aa11.52□□□□□ -0.57
CLK3-206ENST00000562078 LPAR5Q9H1C0 372 aa11.52□□□□□ -0.57
CLK3-206ENST00000562078 BANF2Q9H503 90 aa11.52□□□□□ -0.57
CLK3-206ENST00000562078 RNF115Q9Y4L5 304 aa11.52□□□□□ -0.57
CLK3-206ENST00000562078 MED12Q93074 2177 aa11.52□□□□□ -0.57
CLK3-206ENST00000562078 LOC105371242A0A075B767 164 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 LOC102723971A0A1B0GUV8 181 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 A0A1W2PP11 408 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 P2RY10O00398 339 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 GDF9O60383 454 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 TNFSF13O75888 250 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 BPNT1O95861 308 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 GLI4P10075 376 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 OMGP23515 440 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 C1orf140Q5VVS0 124 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 C16orf82Q7Z2V1 217 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 NUP54Q7Z3B4 507 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 STPG4Q8N801 248 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 OR10S1Q8NGN2 331 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 C8orf44Q96CB5 159 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 TMEM9BQ9NQ34 198 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 SLC7A11Q9UPY5 501 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 M0QZ24 198 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 TRAPPC6AO75865 159 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 MPIG6BO95866 241 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 RENP00797 406 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 CD59P13987 128 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 HIST1H1DP16402 221 aaKnown RBP11.51□□□□□ -0.57
CLK3-206ENST00000562078 SNU13P55769 128 aaKnown RBP11.51□□□□□ -0.57
CLK3-206ENST00000562078 TMEM50BP56557 158 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 RUNX1Q01196 453 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 EWSR1Q01844 656 aaKnown RBP eCLIP11.51□□□□□ -0.57
CLK3-206ENST00000562078 ARFRP1Q13795 201 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 ENDOGQ14249 297 aaKnown RBP11.51□□□□□ -0.57
CLK3-206ENST00000562078 EMC4Q5J8M3 183 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 FAM69BQ5VUD6 431 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 SLC18B1Q6NT16 456 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 SUMF1Q8NBK3 374 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 ZCCHC14Q8WYQ9 949 aaKnown RBP11.51□□□□□ -0.57
CLK3-206ENST00000562078 ARHGAP5-AS1Q96IT6 56 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 PYGO2Q9BRQ0 406 aa11.51□□□□□ -0.57
CLK3-206ENST00000562078 ZFP92A6NM28 416 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 ATP6V1FQ16864 119 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 CST9LP1Q5W188 147 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 GRINAQ7Z429 371 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 LYZL2Q7Z4W2 148 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 AGBL5Q8NDL9 886 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 NUDT10Q8NFP7 164 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 OR5L2Q8NGL0 311 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 GPR84Q9NQS5 396 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 FAM24AA6NFZ4 105 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 TMEM14DPA8MWL7 114 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 H2BFMP0C1H6 154 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 HIST1H3AP68431 136 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 ACTL10Q5JWF8 245 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 SULF2Q8IWU5 870 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 FBXL14Q8N1E6 418 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 TMEM171Q8WVE6 324 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 ABHD6Q9BV23 337 aa11.5□□□□□ -0.57
CLK3-206ENST00000562078 AKIRIN1Q9H9L7 192 aaPredicted RBP11.5□□□□□ -0.57
CLK3-206ENST00000562078 NPIPB7O75200 414 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 MT-ATP6P00846 226 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 ADIRFQ15847 76 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 SGCBQ16585 318 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 OR51G1Q8NGK1 321 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 MRGPRDQ8TDS7 321 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 RBMXL1Q96E39 390 aaKnown RBP11.49□□□□□ -0.57
CLK3-206ENST00000562078 CIB3Q96Q77 187 aaPredicted RBP11.49□□□□□ -0.57
CLK3-206ENST00000562078 CNTRLQ7Z7A1 2325 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 A0A1W2PN81 502 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 OR6A2O95222 327 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 CHRNA7P36544 502 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 ACKR1Q16570 336 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 CHRFAM7AQ494W8 412 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 OR8G2PQ6IF36 304 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 SMIM15Q7Z3B0 74 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 CPEB2Q7Z5Q1 589 aaKnown RBP11.49□□□□□ -0.57
CLK3-206ENST00000562078 SLC22A24Q8N4F4 322 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 CTDSP1Q9GZU7 261 aa11.49□□□□□ -0.57
CLK3-206ENST00000562078 G6PC2Q9NQR9 355 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms