RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 SLC35A2P78381 396 aa15.09■□□□□ 0.01
VPS35-202ENST00000561713 IL13RA2Q14627 380 aa15.09■□□□□ 0.01
VPS35-202ENST00000561713 ELP2Q6IA86 826 aa15.09■□□□□ 0.01
VPS35-202ENST00000561713 CENPVQ7Z7K6 275 aaPredicted RBP15.09■□□□□ 0.01
VPS35-202ENST00000561713 PXT1Q8NFP0 134 aa15.09■□□□□ 0.01
VPS35-202ENST00000561713 OR9G1Q8NH87 305 aa15.09■□□□□ 0.01
VPS35-202ENST00000561713 IDI2-AS1Q9NZ38 188 aa15.09■□□□□ 0.01
VPS35-202ENST00000561713 A0A1W2PPI3 338 aa15.08■□□□□ 0
VPS35-202ENST00000561713 BAG2O95816 211 aa15.08■□□□□ 0
VPS35-202ENST00000561713 LALBAP00709 142 aa15.08■□□□□ 0
VPS35-202ENST00000561713 CGB3P0DN86 165 aa15.08■□□□□ 0
VPS35-202ENST00000561713 CGB7P0DN87 165 aa15.08■□□□□ 0
VPS35-202ENST00000561713 PRRX1P54821 245 aa15.08■□□□□ 0
VPS35-202ENST00000561713 MRPL28Q13084 256 aaKnown RBP15.08■□□□□ 0
VPS35-202ENST00000561713 DDI2Q5TDH0 399 aa15.08■□□□□ 0
VPS35-202ENST00000561713 DRAM1Q8N682 238 aa15.08■□□□□ 0
VPS35-202ENST00000561713 ZFP41Q8N8Y5 198 aa15.08■□□□□ 0
VPS35-202ENST00000561713 TMEM106AQ96A25 262 aa15.08■□□□□ 0
VPS35-202ENST00000561713 RCC1LQ96I51 464 aaKnown RBP15.08■□□□□ 0
VPS35-202ENST00000561713 PSG11Q9UQ72 335 aa15.08■□□□□ 0
VPS35-202ENST00000561713 MOB4Q9Y3A3 225 aa15.08■□□□□ 0
VPS35-202ENST00000561713 HSPE1-MOB4S4R3N1 261 aa15.08■□□□□ 0
VPS35-202ENST00000561713 A0A1W2PP11 408 aa15.07■□□□□ 0
VPS35-202ENST00000561713 J3QR06 171 aa15.07■□□□□ 0
VPS35-202ENST00000561713 MAGEB3O15480 346 aa15.07■□□□□ 0
VPS35-202ENST00000561713 SERPINA2P20848 420 aa15.07■□□□□ 0
VPS35-202ENST00000561713 HOXD3P31249 432 aaPredicted RBP15.07■□□□□ 0
VPS35-202ENST00000561713 MNDAP41218 407 aa15.07■□□□□ 0
VPS35-202ENST00000561713 FAM53AQ6NSI3 398 aaPredicted RBP15.07■□□□□ 0
VPS35-202ENST00000561713 SUMF2Q8NBJ7 301 aa15.07■□□□□ 0
VPS35-202ENST00000561713 OR4X2Q8NGF9 303 aa15.07■□□□□ 0
VPS35-202ENST00000561713 GPR148Q8TDV2 347 aa15.07■□□□□ 0
VPS35-202ENST00000561713 CPNE2Q96FN4 548 aaPredicted RBP15.07■□□□□ 0
VPS35-202ENST00000561713 WWC2-AS2Q96NR7 200 aa15.07■□□□□ 0
VPS35-202ENST00000561713 MYCBPQ99417 103 aaPredicted RBP15.07■□□□□ 0
VPS35-202ENST00000561713 DPCDQ9BVM2 203 aaPredicted RBP15.07■□□□□ 0
VPS35-202ENST00000561713 FGF20Q9NP95 211 aaPredicted RBP15.07■□□□□ 0
VPS35-202ENST00000561713 MRPS18AQ9NVS2 196 aaKnown RBP15.07■□□□□ 0
VPS35-202ENST00000561713 AMMECR1Q9Y4X0 333 aaPredicted RBP15.07■□□□□ 0
VPS35-202ENST00000561713 TSSC4Q9Y5U2 329 aaPredicted RBP15.07■□□□□ 0
VPS35-202ENST00000561713 OR7C1O76099 320 aaPredicted RBP15.06■□□□□ 0
VPS35-202ENST00000561713 CD2P06729 351 aa15.06■□□□□ 0
VPS35-202ENST00000561713 RBM11P57052 281 aaKnown RBP15.06■□□□□ 0
VPS35-202ENST00000561713 CD69Q07108 199 aa15.06■□□□□ 0
VPS35-202ENST00000561713 HES1Q14469 280 aa15.06■□□□□ 0
VPS35-202ENST00000561713 HNF4GQ14541 408 aa15.06■□□□□ 0
VPS35-202ENST00000561713 KLHL22Q53GT1 634 aa15.06■□□□□ 0
VPS35-202ENST00000561713 CCDC144NLQ6NUI1 221 aa15.06■□□□□ 0
VPS35-202ENST00000561713 CREB3L1Q96BA8 519 aa15.06■□□□□ 0
VPS35-202ENST00000561713 CYYR1Q96J86 154 aa15.06■□□□□ 0
VPS35-202ENST00000561713 SMPD3Q9NY59 655 aaPredicted RBP15.06■□□□□ 0
VPS35-202ENST00000561713 CLEC2DQ9UHP7 191 aa15.06■□□□□ 0
VPS35-202ENST00000561713 ING4Q9UNL4 249 aa15.06■□□□□ 0
VPS35-202ENST00000561713 ST3GAL6Q9Y274 331 aa15.06■□□□□ 0
VPS35-202ENST00000561713 H3BUI4 141 aa15.05■□□□□ -0
VPS35-202ENST00000561713 GEMIN2O14893 280 aaKnown RBP15.05■□□□□ -0
VPS35-202ENST00000561713 TMEM11P17152 192 aa15.05■□□□□ -0
VPS35-202ENST00000561713 REG1BP48304 166 aa15.05■□□□□ -0
VPS35-202ENST00000561713 PPP3R1P63098 170 aa15.05■□□□□ -0
VPS35-202ENST00000561713 EGFEM1PQ0D2K5 195 aa15.05■□□□□ -0
VPS35-202ENST00000561713 LRRC36Q1X8D7 754 aa15.05■□□□□ -0
VPS35-202ENST00000561713 RPL22L1Q6P5R6 122 aaKnown RBP15.05■□□□□ -0
VPS35-202ENST00000561713 ZNF329Q86UD4 541 aa15.05■□□□□ -0
VPS35-202ENST00000561713 ZNF555Q8NEP9 628 aa15.05■□□□□ -0
VPS35-202ENST00000561713 RBMXL1Q96E39 390 aaKnown RBP15.05■□□□□ -0
VPS35-202ENST00000561713 NOL4LQ96MY1 436 aaPredicted RBP15.05■□□□□ -0
VPS35-202ENST00000561713 BARHL1Q9BZE3 327 aa15.05■□□□□ -0
VPS35-202ENST00000561713 LINC00527Q9UJ94 153 aa15.05■□□□□ -0
VPS35-202ENST00000561713 IGHV3-72A0A0B4J1Y9 119 aa15.04■□□□□ -0
VPS35-202ENST00000561713 PNMA8CA0A1B0GUJ8 204 aa15.04■□□□□ -0
VPS35-202ENST00000561713 OOSP1A8MZH6 123 aa15.04■□□□□ -0
VPS35-202ENST00000561713 NPIPB11E5RHQ5 1161 aa15.04■□□□□ -0
VPS35-202ENST00000561713 IGKV1D-33P01593 117 aa15.04■□□□□ -0
VPS35-202ENST00000561713 IGKV1-33P01594 117 aa15.04■□□□□ -0
VPS35-202ENST00000561713 C21orf33P30042 268 aaPredicted RBP15.04■□□□□ -0
VPS35-202ENST00000561713 ZNF93P35789 620 aaPredicted RBP15.04■□□□□ -0
VPS35-202ENST00000561713 MADCAM1Q13477 382 aa15.04■□□□□ -0
VPS35-202ENST00000561713 ASCL4Q6XD76 172 aa15.04■□□□□ -0
VPS35-202ENST00000561713 C18orf65Q6ZTR6 163 aa15.04■□□□□ -0
VPS35-202ENST00000561713 OSR2Q8N2R0 312 aa15.04■□□□□ -0
VPS35-202ENST00000561713 ZNF565Q8N9K5 539 aa15.04■□□□□ -0
VPS35-202ENST00000561713 CCDC107Q8WV48 283 aa15.04■□□□□ -0
VPS35-202ENST00000561713 CYGBQ8WWM9 190 aa15.04■□□□□ -0
VPS35-202ENST00000561713 SMIM19Q96E16 107 aa15.04■□□□□ -0
VPS35-202ENST00000561713 B9D2Q9BPU9 175 aa15.04■□□□□ -0
VPS35-202ENST00000561713 TRAV8-7A0A075B6U6 113 aa15.03■□□□□ -0
VPS35-202ENST00000561713 IGHV3-43A0A0B4J1X8 118 aa15.03■□□□□ -0
VPS35-202ENST00000561713 PSMB11A5LHX3 300 aa15.03■□□□□ -0
VPS35-202ENST00000561713 DUS4LO95620 317 aaKnown RBP15.03■□□□□ -0
VPS35-202ENST00000561713 FAM106CPP0CH98 169 aa15.03■□□□□ -0
VPS35-202ENST00000561713 IGHV3-43DP0DP04 118 aa15.03■□□□□ -0
VPS35-202ENST00000561713 BDKRB2P30411 391 aa15.03■□□□□ -0
VPS35-202ENST00000561713 SLC22A6Q4U2R8 563 aa15.03■□□□□ -0
VPS35-202ENST00000561713 ATAD3CQ5T2N8 411 aa15.03■□□□□ -0
VPS35-202ENST00000561713 C5orf56Q8N8D9 126 aa15.03■□□□□ -0
VPS35-202ENST00000561713 Q8NFD4 153 aa15.03■□□□□ -0
VPS35-202ENST00000561713 OR10X1Q8NGY0 326 aa15.03■□□□□ -0
VPS35-202ENST00000561713 OR52N1Q8NH53 320 aa15.03■□□□□ -0
VPS35-202ENST00000561713 NEK7Q8TDX7 302 aa15.03■□□□□ -0
VPS35-202ENST00000561713 ZNF184Q99676 751 aaPredicted RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms