RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CMSS1Q9BQ75 279 aaKnown RBP7.64□□□□□ -1.19
LDLR-210ENST00000559340 NICN1Q9BSH3 213 aa7.64□□□□□ -1.19
LDLR-210ENST00000559340 DCUN1D5Q9BTE7 237 aa7.64□□□□□ -1.19
LDLR-210ENST00000559340 FAAP24Q9BTP7 215 aa7.64□□□□□ -1.19
LDLR-210ENST00000559340 PECRQ9BY49 303 aa7.64□□□□□ -1.19
LDLR-210ENST00000559340 C6orf62Q9GZU0 229 aaPredicted RBP7.64□□□□□ -1.19
LDLR-210ENST00000559340 NXF2Q9GZY0 626 aaKnown RBP7.64□□□□□ -1.19
LDLR-210ENST00000559340 GAL3ST2Q9H3Q3 398 aa7.64□□□□□ -1.19
LDLR-210ENST00000559340 CHMP1AQ9HD42 196 aaPredicted RBP7.64□□□□□ -1.19
LDLR-210ENST00000559340 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.64□□□□□ -1.19
LDLR-210ENST00000559340 HIF1ANQ9NWT6 349 aa7.64□□□□□ -1.19
LDLR-210ENST00000559340 OPN4Q9UHM6 478 aa7.64□□□□□ -1.19
LDLR-210ENST00000559340 TRAPPC2LQ9UL33 140 aa7.64□□□□□ -1.19
LDLR-210ENST00000559340 INSIG2Q9Y5U4 225 aa7.64□□□□□ -1.19
LDLR-210ENST00000559340 KPTNQ9Y664 436 aa7.64□□□□□ -1.19
LDLR-210ENST00000559340 LINC00312Q9Y6C7 94 aa7.64□□□□□ -1.19
LDLR-210ENST00000559340 TLN2Q9Y4G6 2542 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 CELSR1Q9NYQ6 3014 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 A0A0A6YYD4 124 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 A0A1B0GW55 424 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 ZNF729A6NN14 1252 aaPredicted RBP7.63□□□□□ -1.19
LDLR-210ENST00000559340 FOXI3A8MTJ6 420 aaPredicted RBP7.63□□□□□ -1.19
LDLR-210ENST00000559340 M0R1W7 72 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 HPGDSO60760 199 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 RBP4P02753 201 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 MT-ND4P03905 459 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 DUX4L2P0CJ85 424 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 DUX4L3P0CJ86 424 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 DUX4L4P0CJ87 422 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 DUX4L5P0CJ88 424 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 DUX4L6P0CJ89 424 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 DUX4L7P0CJ90 424 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 ZNF728P0DKX0 622 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 HIST1H1DP16402 221 aaKnown RBP7.63□□□□□ -1.19
LDLR-210ENST00000559340 CBX5P45973 191 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 GNG2P59768 71 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 ATXN7L3Q14CW9 347 aaPredicted RBP7.63□□□□□ -1.19
LDLR-210ENST00000559340 RSBN1Q5VWQ0 802 aaPredicted RBP7.63□□□□□ -1.19
LDLR-210ENST00000559340 TMEM200BQ69YZ2 307 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 OR52W1Q6IF63 320 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 DUX4L9Q6RFH8 374 aaPredicted RBP7.63□□□□□ -1.19
LDLR-210ENST00000559340 ZNF497Q6ZNH5 498 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 C6orf201Q7Z4U5 140 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 CIARTQ8N365 385 aaPredicted RBP7.63□□□□□ -1.19
LDLR-210ENST00000559340 OR4M1Q8NGD0 313 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 SLC25A38Q96DW6 304 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 DIRAS2Q96HU8 199 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 ZNF714Q96N38 554 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 SULT4A1Q9BR01 284 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 SLIRPQ9GZT3 109 aaKnown RBP7.63□□□□□ -1.19
LDLR-210ENST00000559340 C7orf69Q9H7B7 122 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 LPAR2Q9HBW0 351 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 ING3Q9NXR8 418 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 DUX4Q9UBX2 424 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 KIF25Q9UIL4 384 aa7.63□□□□□ -1.19
LDLR-210ENST00000559340 AKAP9Q99996 3911 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 HIVEP2P31629 2446 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 TRBV6-6A0A0A6YYG2 114 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 C22orf46C9J442 243 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 MFNGO00587 321 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 CTDSP2O14595 271 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 SPINT2O43291 252 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 ORC5O43913 435 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 GNB3P16520 340 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 ELK1P19419 428 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 HNF1AP20823 631 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 CDK2P24941 298 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 GLIPR1P48060 266 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 PAX8Q06710 450 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 PLA2G7Q13093 441 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 TMEM30BQ3MIR4 351 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 HACD4Q5VWC8 232 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 FAHD2BQ6P2I3 314 aaPredicted RBP7.62□□□□□ -1.19
LDLR-210ENST00000559340 BRICD5Q6PL45 260 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 METAP1DQ6UB28 335 aaPredicted RBP7.62□□□□□ -1.19
LDLR-210ENST00000559340 GAPTQ8N292 157 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 OR10A7Q8NGE5 316 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 PLPPR1Q8TBJ4 325 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 FAHD2AQ96GK7 314 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 COQ2Q96H96 371 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 AUNIPQ9H7T9 357 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 HEXA-AS1Q9H8Q6 139 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 C12orf4Q9NQ89 552 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 YAE1D1Q9NRH1 226 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 C19orf12Q9NSK7 152 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 ONECUT1Q9UBC0 465 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 EXTL2Q9UBQ6 330 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 AK3Q9UIJ7 227 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 MRPS7Q9Y2R9 242 aaKnown RBP7.62□□□□□ -1.19
LDLR-210ENST00000559340 AUP1Q9Y679 476 aa7.62□□□□□ -1.19
LDLR-210ENST00000559340 NAV3Q8IVL0 2385 aa7.61□□□□□ -1.19
LDLR-210ENST00000559340 KBTBD11-OT1A0A1B0GTJ5 212 aa7.61□□□□□ -1.19
LDLR-210ENST00000559340 A8MV72 311 aaPredicted RBP7.61□□□□□ -1.19
LDLR-210ENST00000559340 SULT1C2O00338 296 aa7.61□□□□□ -1.19
LDLR-210ENST00000559340 TOX4O94842 621 aa7.61□□□□□ -1.19
LDLR-210ENST00000559340 EIF4EP06730 217 aaKnown RBP7.61□□□□□ -1.19
LDLR-210ENST00000559340 MELTFP08582 738 aa7.61□□□□□ -1.19
LDLR-210ENST00000559340 ZNF16P17020 682 aaPredicted RBP7.61□□□□□ -1.19
LDLR-210ENST00000559340 DTYMKP23919 212 aa7.61□□□□□ -1.19
LDLR-210ENST00000559340 PRSS3P35030 304 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms