RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 C12orf49Q9H741 205 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 A0A1B0GTI1 187 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 DUXBA0A1W2PPF3 345 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 NXPH2O95156 264 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 GRPP07492 148 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 SEC11BP0C7V7 166 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 MMP9P14780 707 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 CD27P26842 260 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 SPCS3P61009 180 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 VAX1Q5SQQ9 334 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 ZNF343Q6P1L6 599 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 ZNF880Q6PDB4 577 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 OR10P1Q8NGE3 313 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 OR10A7Q8NGE5 316 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 CTHRC1Q96CG8 243 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 SLC25A22Q9H936 323 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 PTPRDP23468 1912 aa6.24□□□□□ -1.41
USP3-210ENST00000559192 TOX3O15405 576 aaPredicted RBP6.23□□□□□ -1.41
USP3-210ENST00000559192 CHST1O43916 411 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 ZNF253O75346 499 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 HOXC4P09017 264 aaPredicted RBP6.23□□□□□ -1.41
USP3-210ENST00000559192 FABP2P12104 132 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 ROM1Q03395 351 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 C1orf100Q5SVJ3 147 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 REC114Q7Z4M0 266 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 POC1AQ8NBT0 407 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 OR52L2PQ8NGH6 319 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 OR2T10Q8NGZ9 312 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 PRSS3P2Q8NHM4 247 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 ZNF519Q8TB69 540 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 DMRTA2Q96SC8 542 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 FAM206AQ9NX38 181 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 GNG12Q9UBI6 72 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 HSPB8Q9UJY1 196 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 MAP1LC3B2A6NCE7 125 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 ZNHIT1O43257 154 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 HAND1O96004 215 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 CCL2P13500 99 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 MEOX1P50221 254 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 FUT6P51993 359 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 ZXDAP98168 799 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 FAM3AP98173 230 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 HES1Q14469 280 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 ANKRD37Q7Z713 158 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 OR1F12Q8NHA8 337 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 MAP1LC3BQ9GZQ8 125 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 A0A1W2PQD3 144 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 CLEC18AA5D8T8 446 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 ZNF732B4DXR9 585 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 TGFBR3LH3BV60 316 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 ISLRO14498 428 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 DXOO77932 396 aaKnown RBP6.23□□□□□ -1.41
USP3-210ENST00000559192 FUT3P21217 361 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 MMP16P51512 607 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 SUMO3P55854 103 aaPredicted RBP6.23□□□□□ -1.41
USP3-210ENST00000559192 RSPO4Q2I0M5 234 aaPredicted RBP6.23□□□□□ -1.41
USP3-210ENST00000559192 KMT5CQ86Y97 462 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 CLEC18CQ8NCF0 446 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 GNRHR2Q96P88 292 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 CACFD1Q9UGQ2 172 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 PCOLCE2Q9UKZ9 415 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 FUT9Q9Y231 359 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 STARD10Q9Y365 291 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 MTCH2Q9Y6C9 303 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 VWA8A3KMH1 1905 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 IFITM10A6NMD0 228 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 CXCL13O43927 109 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 KIR2DL1P43626 348 aaPredicted RBP6.23□□□□□ -1.41
USP3-210ENST00000559192 CSN1S1P47710 185 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 CCR5P51681 352 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 HLA-DRB5Q30154 266 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 LINC00114Q6XXX2 140 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 H2BFWTQ7Z2G1 175 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 BIVMQ86UB2 503 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 GAPTQ8N292 157 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 MVB12AQ96EY5 273 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 GPHA2Q96T91 129 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 BARX1Q9HBU1 254 aaPredicted RBP6.23□□□□□ -1.41
USP3-210ENST00000559192 HES4Q9HCC6 221 aa6.23□□□□□ -1.41
USP3-210ENST00000559192 DIRC3C9JPN6 131 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 IL2RAP01589 272 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 PAX5Q02548 391 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 SAPCD1Q5SSQ6 148 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 SLC22A18ASQ8N1D0 253 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 RNF126Q9BV68 326 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 FOXJ2Q9P0K8 574 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 METTL1Q9UBP6 276 aaKnown RBP6.22□□□□□ -1.41
USP3-210ENST00000559192 IL19Q9UHD0 177 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 MEX3AA1L020 520 aaKnown RBP6.22□□□□□ -1.41
USP3-210ENST00000559192 TRDCB7Z8K6 153 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 PIAS2O75928 621 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 ISG15P05161 165 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 EN2P19622 333 aaPredicted RBP6.22□□□□□ -1.41
USP3-210ENST00000559192 UQCRFS1P47985 274 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 CNN1P51911 297 aaKnown RBP6.22□□□□□ -1.41
USP3-210ENST00000559192 ARG2P78540 354 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 ZDHHC23Q8IYP9 409 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 LRRC75AQ8NAA5 344 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 CLDN23Q96B33 292 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 SPSB1Q96BD6 273 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms