RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 ODAMA1E959 279 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 MEX3AA1L020 520 aaKnown RBP7.95□□□□□ -1.14
CUX1-216ENST00000558469 MEIOCA2RUB1 952 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 FUOMA2VDF0 154 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 MEIS3P1A6NDR6 274 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 FAM157AC9JC47 383 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 CA11O75493 328 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 MT-ND4P03905 459 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 MELTFP08582 738 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 ZFP36P26651 326 aaKnown RBP7.95□□□□□ -1.14
CUX1-216ENST00000558469 ERP29P30040 261 aaKnown RBP7.95□□□□□ -1.14
CUX1-216ENST00000558469 PRSS3P35030 304 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 P2RX3P56373 397 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 GNG2P59768 71 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 RPL31P62899 125 aaKnown RBP7.95□□□□□ -1.14
CUX1-216ENST00000558469 PITPNAQ00169 270 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 PNLIPRP3Q17RR3 467 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 CD276Q5ZPR3 534 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 OR4K15Q8NH41 348 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 SETD6Q8TBK2 473 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 MRPL30Q8TCC3 161 aaKnown RBP7.95□□□□□ -1.14
CUX1-216ENST00000558469 NUDCD2Q8WVJ2 157 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 ABHD1Q96SE0 405 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 DCTN5Q9BTE1 182 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 LPAR2Q9HBW0 351 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 C19orf12Q9NSK7 152 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 RABL2AQ9UBK7 228 aaPredicted RBP7.95□□□□□ -1.14
CUX1-216ENST00000558469 TRAPPC2LQ9UL33 140 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 RABL2BQ9UNT1 228 aa7.95□□□□□ -1.14
CUX1-216ENST00000558469 KIAA1324LA8MWY0 1029 aaPredicted RBP7.94□□□□□ -1.14
CUX1-216ENST00000558469 H7C1Q1 480 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 SMAD7O15105 426 aaKnown RBP7.94□□□□□ -1.14
CUX1-216ENST00000558469 SSX5O60225 188 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 FOXH1O75593 365 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 TPPPO94811 219 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 ECDO95905 644 aaPredicted RBP7.94□□□□□ -1.14
CUX1-216ENST00000558469 NAPSAO96009 420 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 PAX5Q02548 391 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 MEF2CQ06413 473 aaPredicted RBP7.94□□□□□ -1.14
CUX1-216ENST00000558469 PYDC2Q56P42 97 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 RNASE12Q5GAN4 147 aaKnown RBP7.94□□□□□ -1.14
CUX1-216ENST00000558469 TMEM200BQ69YZ2 307 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 PYHIN1Q6K0P9 492 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 LINC00299Q6ZSB3 139 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 TRAPPC6BQ86SZ2 158 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 FAM185AQ8N0U4 392 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 CIARTQ8N365 385 aaPredicted RBP7.94□□□□□ -1.14
CUX1-216ENST00000558469 C15orf40Q8WUR7 153 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 MAFIPQ8WZ33 124 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 SOSTQ9BQB4 213 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 ST6GALNAC5Q9BVH7 336 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 RIMS4Q9H426 269 aaPredicted RBP7.94□□□□□ -1.14
CUX1-216ENST00000558469 C12orf4Q9NQ89 552 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 ZNF230Q9UIE0 474 aaPredicted RBP7.94□□□□□ -1.14
CUX1-216ENST00000558469 RPUSD1Q9UJJ7 312 aaKnown RBP7.94□□□□□ -1.14
CUX1-216ENST00000558469 V9GYH0 126 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 NOTCH2Q04721 2471 aa7.94□□□□□ -1.14
CUX1-216ENST00000558469 FLNAP21333 2647 aaKnown RBP7.93□□□□□ -1.14
CUX1-216ENST00000558469 TEX15Q9BXT5 2789 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 TRGV10A0A0A0MS01 117 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 TRBV23-1A0A0A0MS06 115 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 PPIAL4CA0A0B4J2A2 164 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 hADV38S2A0JD32 116 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 CYSRT1A8MQ03 144 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 A8MXK9 166 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 B4DSR2 109 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 C22orf46C9J442 243 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 FCER2P06734 321 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 FCGR3AP08637 254 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 PPIAL4GP0DN37 164 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 RCC1P18754 421 aaPredicted RBP7.93□□□□□ -1.14
CUX1-216ENST00000558469 PTBP1P26599 531 aaKnown RBP eCLIP7.93□□□□□ -1.144e-11■■■■■ 43.6
CUX1-216ENST00000558469 ETV6P41212 452 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 GLP1RP43220 463 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 DGCR2P98153 550 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 ZNF45Q02386 682 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 ZNF79Q15937 498 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 Q6ZPA2 131 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 GAPTQ8N292 157 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 ZNF565Q8N9K5 539 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 OR13A1Q8NGR1 328 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 C8orf46Q8TAG6 207 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 MRGPRDQ8TDS7 321 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 FCAMRQ8WWV6 532 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 S100ZQ8WXG8 99 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 C1orf159Q96HA4 380 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 OCSTAMPQ9BR26 566 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 NCOR1P1Q9H4R4 102 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 Q9N2K0 584 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 AKIP1Q9NQ31 210 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 IFT46Q9NQC8 304 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 OR6C3Q9NZP0 311 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 LPAR3Q9UBY5 353 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 LINC00312Q9Y6C7 94 aa7.93□□□□□ -1.14
CUX1-216ENST00000558469 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.93□□□□□ -1.14
CUX1-216ENST00000558469 OTOGQ6ZRI0 2925 aa7.92□□□□□ -1.14
CUX1-216ENST00000558469 ZNF469Q96JG9 3925 aaPredicted RBP7.92□□□□□ -1.14
CUX1-216ENST00000558469 ZANQ9Y493 2812 aa7.92□□□□□ -1.14
CUX1-216ENST00000558469 TRBV6-6A0A0A6YYG2 114 aa7.92□□□□□ -1.14
CUX1-216ENST00000558469 GABARAPH6UMI1 98 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms