RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 TMEM171Q8WVE6 324 aa11.95□□□□□ -0.5
SHMT2-226ENST00000556825 RBM24Q9BX46 236 aaKnown RBP11.95□□□□□ -0.5
SHMT2-226ENST00000556825 KLHL13Q9P2N7 655 aa11.95□□□□□ -0.5
SHMT2-226ENST00000556825 WASHC3Q9Y3C0 194 aa11.95□□□□□ -0.5
SHMT2-226ENST00000556825 IGSF23A1L1A6 192 aa11.95□□□□□ -0.5
SHMT2-226ENST00000556825 CLEC3BP05452 202 aa11.95□□□□□ -0.5
SHMT2-226ENST00000556825 STAG3L2P0CL84 134 aa11.95□□□□□ -0.5
SHMT2-226ENST00000556825 ERGP11308 486 aa11.95□□□□□ -0.5
SHMT2-226ENST00000556825 EN2P19622 333 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-226ENST00000556825 AMY2BP19961 511 aa11.95□□□□□ -0.5
SHMT2-226ENST00000556825 POU3F1Q03052 451 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-226ENST00000556825 RNFT1Q5M7Z0 435 aa11.95□□□□□ -0.5
SHMT2-226ENST00000556825 MRAP2Q96G30 205 aa11.95□□□□□ -0.5
SHMT2-226ENST00000556825 C11orf1Q9H5F2 150 aa11.95□□□□□ -0.5
SHMT2-226ENST00000556825 GEMIN7Q9H840 131 aaKnown RBP11.95□□□□□ -0.5
SHMT2-226ENST00000556825 CLEC4EQ9ULY5 219 aa11.95□□□□□ -0.5
SHMT2-226ENST00000556825 SLC22A13Q9Y226 551 aa11.95□□□□□ -0.5
SHMT2-226ENST00000556825 TRAV9-2A0A087WT02 112 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 CENPVL1A0A0U1RR11 272 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 TMEM202A6NGA9 273 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 OR11H12B2RN74 326 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 H0Y8G0 127 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 SIRPB1O00241 398 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 LDB3O75112 727 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 GYPAP02724 150 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 HNRNPA1P09651 372 aaKnown RBP eCLIP11.94□□□□□ -0.5
SHMT2-226ENST00000556825 CST5P28325 142 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-226ENST00000556825 CD52P31358 61 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 ECI1P42126 302 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 RUNX1Q01196 453 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 ZP4Q12836 540 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 STUMQ69YW2 141 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 OR11H1Q8NG94 326 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 OR11H2Q8NH07 326 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 SLC25A40Q8TBP6 338 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 LIN37Q96GY3 246 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-226ENST00000556825 FER1L6-AS2Q96M78 137 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 DERL1Q9BUN8 251 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 PLEKHF2Q9H8W4 249 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 WDR76Q9H967 626 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 NPVFQ9HCQ7 196 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 MDC1Q14676 2089 aaKnown RBP11.94□□□□□ -0.5
SHMT2-226ENST00000556825 NPIPB15A6NHN6 443 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-226ENST00000556825 K7EQM0 130 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 SDCBPO00560 298 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-226ENST00000556825 C3orf79P0CE67 100 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 DNASE1L1P49184 302 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 RPS24P62847 133 aaKnown RBP11.94□□□□□ -0.5
SHMT2-226ENST00000556825 HERV-K104P63124 156 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 PLAURQ03405 335 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 TMEM249Q2WGJ8 235 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 TMEM177Q53S58 311 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 ZNF765Q7L2R6 523 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 AMZ2Q86W34 360 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 SULF2Q8IWU5 870 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 OR5A2Q8NGI9 324 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 LRRC61Q9BV99 259 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 THYN1Q9P016 225 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 RARRES3Q9UL19 164 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 TMEM14AQ9Y6G1 99 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 MYO16Q9Y6X6 1858 aa11.94□□□□□ -0.5
SHMT2-226ENST00000556825 HIDE1A8MVS5 230 aa11.93□□□□□ -0.5
SHMT2-226ENST00000556825 MTX2O75431 263 aa11.93□□□□□ -0.5
SHMT2-226ENST00000556825 NGFRP08138 427 aa11.93□□□□□ -0.5
SHMT2-226ENST00000556825 VSIG8P0DPA2 414 aa11.93□□□□□ -0.5
SHMT2-226ENST00000556825 OPRM1P35372 400 aa11.93□□□□□ -0.5
SHMT2-226ENST00000556825 TAS2R46P59540 309 aa11.93□□□□□ -0.5
SHMT2-226ENST00000556825 ZNF74Q16587 644 aa11.93□□□□□ -0.5
SHMT2-226ENST00000556825 SLC18B1Q6NT16 456 aa11.93□□□□□ -0.5
SHMT2-226ENST00000556825 LCN15Q6UWW0 184 aa11.93□□□□□ -0.5
SHMT2-226ENST00000556825 TCF23Q7RTU1 214 aa11.93□□□□□ -0.5
SHMT2-226ENST00000556825 CCDC71LQ8N9Z2 235 aa11.93□□□□□ -0.5
SHMT2-226ENST00000556825 PHF7Q9BWX1 381 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-226ENST00000556825 HIF1ANQ9NWT6 349 aa11.93□□□□□ -0.5
SHMT2-226ENST00000556825 PLA2G3Q9NZ20 509 aa11.93□□□□□ -0.5
SHMT2-226ENST00000556825 COL4A3Q01955 1670 aa11.93□□□□□ -0.5
SHMT2-226ENST00000556825 MUC21A0A0G2JKD1 596 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 MUC21A0A140T8X8 626 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 C17orf112F2Z3M2 114 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 TMEM250H0YL14 139 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 ERI3O43414 337 aaKnown RBP11.92□□□□□ -0.5
SHMT2-226ENST00000556825 VENTXO95231 258 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 NUDT3O95989 172 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 CCL2P13500 99 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 GUCA1AP43080 201 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-226ENST00000556825 DUSP2Q05923 314 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 HSD52Q0P140 79 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 MUC21Q5SSG8 566 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 MRPL2Q5T653 305 aaKnown RBP11.92□□□□□ -0.5
SHMT2-226ENST00000556825 CCDC144NLQ6NUI1 221 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 C12orf54Q6X4T0 127 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 RFLNAQ6ZTI6 216 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 SLC16A11Q8NCK7 471 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 OR10P1Q8NGE3 313 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 OR5C1Q8NGR4 320 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 CHRDL1Q9BU40 450 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 SAA2-SAA4A0A096LPE2 208 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 BRI3O95415 125 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 C1orf105O95561 183 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 NRASP01111 189 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms