RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 C12orf43Q96C57 262 aaKnown RBP3.18□□□□□ -1.9
PRPF39-209ENST00000556353 L3HYPDHQ96EM0 354 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 SMIM12Q96EX1 92 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 OR4K3Q96R72 315 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 PFDN5Q99471 154 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 RNF2Q99496 336 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 ZNF184Q99676 751 aaPredicted RBP3.18□□□□□ -1.9
PRPF39-209ENST00000556353 MND1Q9BWT6 205 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 NARFLQ9H6Q4 476 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 ZNF702PQ9H963 129 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 EML4Q9HC35 981 aaKnown RBP3.18□□□□□ -1.9
PRPF39-209ENST00000556353 FBXO6Q9NRD1 293 aaPredicted RBP3.18□□□□□ -1.9
PRPF39-209ENST00000556353 NECAP2Q9NVZ3 263 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 PLEKHJ1Q9NW61 149 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 PIPOXQ9P0Z9 390 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 PCYOX1Q9UHG3 505 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 PITPNC1Q9UKF7 332 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 NXT1Q9UKK6 140 aaKnown RBP3.18□□□□□ -1.9
PRPF39-209ENST00000556353 FBXL3Q9UKT7 428 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 RAB26Q9ULW5 256 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 NPIPA1Q9UND3 350 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 B9D1Q9UPM9 204 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 FOXJ3Q9UPW0 622 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 KCNIP3Q9Y2W7 256 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 POLR3HQ9Y535 204 aaPredicted RBP3.18□□□□□ -1.9
PRPF39-209ENST00000556353 TSSC4Q9Y5U2 329 aaPredicted RBP3.18□□□□□ -1.9
PRPF39-209ENST00000556353 KPTNQ9Y664 436 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 ALG5Q9Y673 324 aa3.18□□□□□ -1.9
PRPF39-209ENST00000556353 CHD3Q12873 2000 aaKnown RBP3.18□□□□□ -1.9
PRPF39-209ENST00000556353 PRKDCP78527 4128 aaKnown RBP3.17□□□□□ -1.9
PRPF39-209ENST00000556353 A0A0A6YYD4 124 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 NSG1A0A0A6YYJ2 146 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 METTL21EPA6NDL7 271 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 ZNF99A8MXY4 864 aaPredicted RBP3.17□□□□□ -1.9
PRPF39-209ENST00000556353 CLDN34H7C241 214 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 GFYI3L273 518 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 DLGAP1O14490 977 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 RFXANKO14593 260 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 NBR2O15453 112 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 XRCC2O43543 280 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 SGCEO43556 437 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 PLIN3O60664 434 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 ENTPD5O75356 428 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 RDH16O75452 317 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 ADAP1O75689 374 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 SLC2A10O95528 541 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 ETHE1O95571 254 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 TXNDC12O95881 172 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 FAM107AO95990 144 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 ETS2P15036 469 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 NQO1P15559 274 aaKnown RBP3.17□□□□□ -1.9
PRPF39-209ENST00000556353 PAX6P26367 422 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 SSTR5P35346 364 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 PTGFRP43088 359 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 CA7P43166 264 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 PLA2G16P53816 162 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 CDKN2DP55273 166 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 TAS2R39P59534 338 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 ARG2P78540 354 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 IFITM2Q01629 132 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 PRDX1Q06830 199 aaKnown RBP3.17□□□□□ -1.9
PRPF39-209ENST00000556353 BNIP2Q12982 314 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 RAB31Q13636 194 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 PSG5Q15238 335 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 OR4D1Q15615 310 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 PGGHGQ32M88 737 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 LIN52Q52LA3 116 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 SPIN3Q5JUX0 258 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 Q6P435 159 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 TMPRSS11AQ6ZMR5 421 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 ACOT7LQ6ZUV0 252 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 ERASQ7Z444 233 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 ANKRD37Q7Z713 158 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 MRPL52Q86TS9 123 aaKnown RBP3.17□□□□□ -1.9
PRPF39-209ENST00000556353 TGIF2LYQ8IUE0 185 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 MKXQ8IYA7 352 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 BOD1L2Q8IYS8 172 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 STPG2Q8N412 459 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 RPRMLQ8N4K4 120 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 ZNF740Q8NDX6 193 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 NFAM1Q8NET5 270 aaPredicted RBP3.17□□□□□ -1.9
PRPF39-209ENST00000556353 OR5L1Q8NGL2 311 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 OR6M1Q8NGM8 313 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 SPRYD4Q8WW59 207 aaPredicted RBP3.17□□□□□ -1.9
PRPF39-209ENST00000556353 LHX4Q969G2 390 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 TESCQ96BS2 214 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 CMTM5Q96DZ9 223 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 MS4A14Q96JA4 679 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 CXorf58Q96LI9 332 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 GPR21Q99679 349 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 C19orf24Q9BVV8 132 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 MAP1LC3CQ9BXW4 147 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 C1orf198Q9H425 327 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 NMNAT1Q9HAN9 279 aaPredicted RBP3.17□□□□□ -1.9
PRPF39-209ENST00000556353 BIN3Q9NQY0 253 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 SLC2A9Q9NRM0 540 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 AGPAT4Q9NRZ5 378 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 C1orf109Q9NX04 203 aa3.17□□□□□ -1.9
PRPF39-209ENST00000556353 ZNF223Q9UK11 482 aaPredicted RBP3.17□□□□□ -1.9
PRPF39-209ENST00000556353 ZNF490Q9ULM2 529 aaPredicted RBP3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms