RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 TMEM230Q96A57 120 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 TAAR6Q96RI8 345 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 PLA2G3Q9NZ20 509 aa7.31□□□□□ -1.24
LIMCH1-216ENST00000512820 A0A1W2PR77 199 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 PAX6P26367 422 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 ERVS71-1P61550 626 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 FAM209BQ5JX69 171 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 ETV3LQ6ZN32 361 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 OR10G4Q8NGN3 311 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 OR10G9Q8NGN4 311 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 OR10G7Q8NGN6 311 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 MRGPRFQ96AM1 343 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 DUSP15Q9H1R2 295 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 NAT8Q9UHE5 227 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 VAX2Q9UIW0 290 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 OR2W1Q9Y3N9 320 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 V9GYS6 101 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 OR5B21A6NL26 309 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 G3V3Q6 166 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 LDLRAD4O15165 306 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 DNPH1O43598 174 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 MGST1P10620 155 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 ZNF468Q5VIY5 522 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 PACRGQ96M98 296 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 FBLN5Q9UBX5 448 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 TRAV39A0A0B4J263 110 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 A0A1B0GU03 582 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 DUXBA0A1W2PPF3 345 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 H0YL77 283 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 SCTP09683 121 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 PSG2P11465 335 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 ZXDAP98168 799 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 OR1C1Q15619 314 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 BTNL8Q6UX41 500 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 CXorf67Q86X51 503 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 GPHA2Q96T91 129 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 ANGPTL4Q9BY76 406 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 OR51M1Q9H341 326 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 WNT16Q9UBV4 365 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 PRSS50Q9UI38 385 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 MPC1Q9Y5U8 109 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 FNDC1Q4ZHG4 1894 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 PTBP3O95758 552 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 ZNF17P17021 662 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 TNFSF4P23510 183 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 CHRNA7P36544 502 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 MDH2P40926 338 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 PPP1CBP62140 327 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 ASPHD2Q6ICH7 369 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 OR4A4PQ8NGN8 299 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 ZDHHC11Q9H8X9 412 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 FAM186AA6NE01 2351 aa7.3□□□□□ -1.24
LIMCH1-216ENST00000512820 MEX3AA1L020 520 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 SLC22A20A6NK97 555 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 RRP8O43159 456 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 HEXAP06865 529 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 FABP6P51161 128 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 RND3P61587 244 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 EIF3IQ13347 325 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 SPINK14Q6IE38 97 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 TUSC5Q8IXB3 177 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 OR10A7Q8NGE5 316 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 RFESDQ8TAC1 157 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 C22orf15Q8WYQ4 148 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 GPR87Q9BY21 358 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 FAM117AQ9C073 453 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 WDR54Q9H977 334 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 MTCH1Q9NZJ7 389 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 TRAPPC1Q9Y5R8 145 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 A0A1W2PR80 420 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 MRGPRGQ86SM5 289 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 POC1BQ8TC44 478 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 PLPPR2Q96GM1 343 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 TM2D1Q9BX74 207 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 OR2D2Q9H210 308 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 TMEM9BQ9NQ34 198 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 A0A087X0M5 115 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 A0A0A6YYD4 124 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 A0A1B0GX30 115 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 TRGC2P03986 189 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 HSPB1P04792 205 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 SUCLG1P53597 346 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 SPINK9Q5DT21 86 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 TMEM147Q9BVK8 224 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 MRPL13Q9BYD1 178 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 ARHGEF17Q96PE2 2063 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 ZNHIT1O43257 154 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 F2RP25116 425 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 OR3A1P47881 315 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 DPPA3Q6W0C5 159 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 H1FOOQ8IZA3 346 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 MUCL1Q96DR8 90 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 TMEM68Q96MH6 324 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 ZNF488Q96MN9 340 aa7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 LYRM2Q9NU23 88 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 TCF20Q9UGU0 1960 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-216ENST00000512820 IGKV1-9A0A0C4DH69 117 aa7.28□□□□□ -1.24
LIMCH1-216ENST00000512820 OR5H1A6NKK0 313 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms