RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 TMEM106AQ96A25 262 aa17.15■□□□□ 0.34
USP40-215ENST00000484528 BARHL1Q9BZE3 327 aa17.15■□□□□ 0.34
USP40-215ENST00000484528 FGF20Q9NP95 211 aaPredicted RBP17.15■□□□□ 0.34
USP40-215ENST00000484528 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.15■□□□□ 0.34
USP40-215ENST00000484528 PSG11Q9UQ72 335 aa17.15■□□□□ 0.34
USP40-215ENST00000484528 AMMECR1Q9Y4X0 333 aaPredicted RBP17.15■□□□□ 0.34
USP40-215ENST00000484528 TSSC4Q9Y5U2 329 aaPredicted RBP17.15■□□□□ 0.34
USP40-215ENST00000484528 A0A1W2PPE3 182 aa17.14■□□□□ 0.33
USP40-215ENST00000484528 BAG2O95816 211 aa17.14■□□□□ 0.33
USP40-215ENST00000484528 DDI2Q5TDH0 399 aa17.14■□□□□ 0.33
USP40-215ENST00000484528 FOXB2Q5VYV0 432 aa17.14■□□□□ 0.33
USP40-215ENST00000484528 RPL22L1Q6P5R6 122 aaKnown RBP17.14■□□□□ 0.33
USP40-215ENST00000484528 C10orf67Q8IYJ2 551 aa17.14■□□□□ 0.33
USP40-215ENST00000484528 DRAM1Q8N682 238 aa17.14■□□□□ 0.33
USP40-215ENST00000484528 SUMF2Q8NBJ7 301 aa17.14■□□□□ 0.33
USP40-215ENST00000484528 OR13C5Q8NGS8 318 aa17.14■□□□□ 0.33
USP40-215ENST00000484528 DPCDQ9BVM2 203 aaPredicted RBP17.14■□□□□ 0.33
USP40-215ENST00000484528 ING4Q9UNL4 249 aa17.14■□□□□ 0.33
USP40-215ENST00000484528 MOB4Q9Y3A3 225 aa17.14■□□□□ 0.33
USP40-215ENST00000484528 SIRT4Q9Y6E7 314 aaPredicted RBP17.14■□□□□ 0.33
USP40-215ENST00000484528 HSPE1-MOB4S4R3N1 261 aa17.14■□□□□ 0.33
USP40-215ENST00000484528 A0A1W2PPI3 338 aa17.13■□□□□ 0.33
USP40-215ENST00000484528 OR7C1O76099 320 aaPredicted RBP17.13■□□□□ 0.33
USP40-215ENST00000484528 CLIC3O95833 236 aa17.13■□□□□ 0.33
USP40-215ENST00000484528 FAM106CPP0CH98 169 aa17.13■□□□□ 0.33
USP40-215ENST00000484528 HES1Q14469 280 aa17.13■□□□□ 0.33
USP40-215ENST00000484528 HNF4GQ14541 408 aa17.13■□□□□ 0.33
USP40-215ENST00000484528 ASCL4Q6XD76 172 aa17.13■□□□□ 0.33
USP40-215ENST00000484528 ZNF555Q8NEP9 628 aa17.13■□□□□ 0.33
USP40-215ENST00000484528 UBALD1Q8TB05 177 aa17.13■□□□□ 0.33
USP40-215ENST00000484528 HAVCR2Q8TDQ0 301 aa17.13■□□□□ 0.33
USP40-215ENST00000484528 ST3GAL6Q9Y274 331 aa17.13■□□□□ 0.33
USP40-215ENST00000484528 NPIPB11E5RHQ5 1161 aa17.12■□□□□ 0.33
USP40-215ENST00000484528 SERPINA2P20848 420 aa17.12■□□□□ 0.33
USP40-215ENST00000484528 LOXL3P58215 753 aa17.12■□□□□ 0.33
USP40-215ENST00000484528 PPP3R1P63098 170 aa17.12■□□□□ 0.33
USP40-215ENST00000484528 MADCAM1Q13477 382 aa17.12■□□□□ 0.33
USP40-215ENST00000484528 WFDC9Q8NEX5 89 aa17.12■□□□□ 0.33
USP40-215ENST00000484528 Q8NFD4 153 aa17.12■□□□□ 0.33
USP40-215ENST00000484528 NCOR1P1Q9H4R4 102 aa17.12■□□□□ 0.33
USP40-215ENST00000484528 PCDHB16Q9NRJ7 776 aa17.12■□□□□ 0.33
USP40-215ENST00000484528 SMPD3Q9NY59 655 aaPredicted RBP17.12■□□□□ 0.33
USP40-215ENST00000484528 A0A1W2PP11 408 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 FAM90A18PA6NE21 464 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 FAM90A16PA6NEW6 464 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 FAM90A20PA6NIJ5 464 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 FAM90A9PA6NNJ1 464 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 FAM90A12PA8MX19 464 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 FAM90A5PA8MXJ8 464 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 M0QZK8 103 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 GEMIN2O14893 280 aaKnown RBP17.11■□□□□ 0.33
USP40-215ENST00000484528 LALBAP00709 142 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 FAM90A15PP0C7V4 464 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 FAM90A13PP0C7W8 464 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 FAM90A14PP0C7W9 464 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 FAM90A24PP0C7X0 464 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 TMEM11P17152 192 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 ZNF93P35789 620 aaPredicted RBP17.11■□□□□ 0.33
USP40-215ENST00000484528 RBM11P57052 281 aaKnown RBP17.11■□□□□ 0.33
USP40-215ENST00000484528 CCDC58Q4VC31 144 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 TMPRSS11AQ6ZMR5 421 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 ZNF329Q86UD4 541 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 OSR2Q8N2R0 312 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 METTL9Q9H1A3 318 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 LINC00574Q9H8X3 128 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 TMEM138Q9NPI0 162 aa17.11■□□□□ 0.33
USP40-215ENST00000484528 DNAH3Q8TD57 4116 aa17.1■□□□□ 0.33
USP40-215ENST00000484528 MAGEA13PA6NCF6 341 aa17.1■□□□□ 0.33
USP40-215ENST00000484528 CSTBP04080 98 aaKnown RBP17.1■□□□□ 0.33
USP40-215ENST00000484528 DCKP27707 260 aa17.1■□□□□ 0.33
USP40-215ENST00000484528 KCNJ3P48549 501 aa17.1■□□□□ 0.33
USP40-215ENST00000484528 ZFP41Q8N8Y5 198 aa17.1■□□□□ 0.33
USP40-215ENST00000484528 OR10X1Q8NGY0 326 aa17.1■□□□□ 0.33
USP40-215ENST00000484528 OR52N1Q8NH53 320 aa17.1■□□□□ 0.33
USP40-215ENST00000484528 NEK7Q8TDX7 302 aa17.1■□□□□ 0.33
USP40-215ENST00000484528 NOL4LQ96MY1 436 aaPredicted RBP17.1■□□□□ 0.33
USP40-215ENST00000484528 CLEC2DQ9UHP7 191 aa17.1■□□□□ 0.33
USP40-215ENST00000484528 ZNF281Q9Y2X9 895 aa17.1■□□□□ 0.33
USP40-215ENST00000484528 PSMB11A5LHX3 300 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 MPIG6BO95866 241 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 IGKV1D-33P01593 117 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 IGKV1-33P01594 117 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 BDKRB2P30411 391 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 REG1BP48304 166 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 PAX5Q02548 391 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 ATAD3CQ5T2N8 411 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 FAM53AQ6NSI3 398 aaPredicted RBP17.09■□□□□ 0.33
USP40-215ENST00000484528 THNSL2Q86YJ6 484 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 C5orf56Q8N8D9 126 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 CCDC107Q8WV48 283 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 SMIM19Q96E16 107 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 S100A13Q99584 98 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 ZNF184Q99676 751 aaPredicted RBP17.09■□□□□ 0.33
USP40-215ENST00000484528 IL36GQ9NZH8 169 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 LINC00527Q9UJ94 153 aa17.09■□□□□ 0.33
USP40-215ENST00000484528 IGHV3-72A0A0B4J1Y9 119 aa17.08■□□□□ 0.32
USP40-215ENST00000484528 TMEM30CPA0ZSE6 113 aa17.08■□□□□ 0.32
USP40-215ENST00000484528 OGG1O15527 345 aa17.08■□□□□ 0.32
USP40-215ENST00000484528 MYL12AP19105 171 aa17.08■□□□□ 0.32
USP40-215ENST00000484528 RAB7AP51149 207 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms