RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 UBE2IP63279 158 aaKnown RBP2.92□□□□□ -1.94
UPF3B-203ENST00000478840 CLEC12BQ2HXU8 276 aa2.92□□□□□ -1.94
UPF3B-203ENST00000478840 DNLZQ5SXM8 178 aa2.92□□□□□ -1.94
UPF3B-203ENST00000478840 OLIG3Q7RTU3 272 aa2.92□□□□□ -1.94
UPF3B-203ENST00000478840 OR8S1Q8NH09 359 aa2.92□□□□□ -1.94
UPF3B-203ENST00000478840 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2.92□□□□□ -1.94
UPF3B-203ENST00000478840 ULBP1Q9BZM6 244 aa2.92□□□□□ -1.94
UPF3B-203ENST00000478840 FBXL15Q9H469 300 aa2.92□□□□□ -1.94
UPF3B-203ENST00000478840 SPANXB1Q9NS25 103 aaPredicted RBP2.92□□□□□ -1.94
UPF3B-203ENST00000478840 BRWD3Q6RI45 1802 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 IGHV1-45A0A0A0MS14 117 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 GOLGA8KD6RF30 607 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 GOLGA8MH3BSY2 632 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 COCHO43405 550 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 ATP8B1O43520 1251 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 HPGDSO60760 199 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 E2F6O75461 281 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 POP7O75817 140 aaKnown RBP2.91□□□□□ -1.94
UPF3B-203ENST00000478840 ZNF3P17036 446 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 HLA-DMAP28067 261 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 RCVRNP35243 200 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 FAM53BQ14153 422 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 ENDOGQ14249 297 aaKnown RBP2.91□□□□□ -1.94
UPF3B-203ENST00000478840 KRTAP5-4Q6L8H1 288 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 SPINT4Q6UDR6 99 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 FAM131AQ6UXB0 335 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 RBP7Q96R05 134 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 RSPO3Q9BXY4 272 aaPredicted RBP2.91□□□□□ -1.94
UPF3B-203ENST00000478840 PLEKHJ1Q9NW61 149 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 TP53TG1Q9Y2A0 90 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 MTCH2Q9Y6C9 303 aa2.91□□□□□ -1.94
UPF3B-203ENST00000478840 CCRL2O00421 344 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 SOX14O95416 240 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 GTF2BQ00403 316 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 SKP2Q13309 424 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 EIF4EBP2Q13542 120 aaPredicted RBP2.9□□□□□ -1.95
UPF3B-203ENST00000478840 SLC36A2Q495M3 483 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 KRTAP13-2Q52LG2 175 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 TMEM69Q5SWH9 247 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 ZFAND6Q6FIF0 208 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 TTC33Q6PID6 262 aaPredicted RBP2.9□□□□□ -1.95
UPF3B-203ENST00000478840 FAM19A3Q7Z5A8 133 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 TMEM144Q7Z5S9 345 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 AMN1Q8IY45 258 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 ZFP82Q8N141 532 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 TMEM156Q8N614 296 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 C2orf15Q8WU43 125 aaKnown RBP2.9□□□□□ -1.95
UPF3B-203ENST00000478840 SMIM12Q96EX1 92 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 PYURFQ96I23 114 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 SCRT1Q9BWW7 348 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 CHST5Q9GZS9 411 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 CLUHO75153 1309 aa2.9□□□□□ -1.95
UPF3B-203ENST00000478840 MAP3K5Q99683 1374 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 IGHV3-21A0A0B4J1V1 117 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 K7EM74 188 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 COILP38432 576 aaPredicted RBP2.89□□□□□ -1.95
UPF3B-203ENST00000478840 ACTR1BP42025 376 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 HSPA13P48723 471 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 INPP1P49441 399 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 MP68P56378 58 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 CLDN12P56749 244 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 MMDQ15546 238 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 C4orf26Q17RF5 130 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 ELP2Q6IA86 826 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 DNM1P34Q6PK57 102 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 SPNS3Q6ZMD2 512 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 VN1R4Q7Z5H5 301 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 C2orf73Q8N5S3 287 aaPredicted RBP2.89□□□□□ -1.95
UPF3B-203ENST00000478840 TMEM251Q8N6I4 163 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 SMIM19Q96E16 107 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 DRC3Q9H069 523 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 UBQLN4Q9NRR5 601 aa2.89□□□□□ -1.95
UPF3B-203ENST00000478840 MARCOQ9UEW3 520 aaPredicted RBP2.89□□□□□ -1.95
UPF3B-203ENST00000478840 KIF26AQ9ULI4 1882 aaPredicted RBP2.88□□□□□ -1.95
UPF3B-203ENST00000478840 RIMS2Q9UQ26 1411 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 A0A1W2PNU3 283 aaPredicted RBP2.88□□□□□ -1.95
UPF3B-203ENST00000478840 F5H5P2 479 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 CGB3P0DN86 165 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 CGB7P0DN87 165 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 CELP19835 753 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 ANP32AP39687 249 aaKnown RBP2.88□□□□□ -1.95
UPF3B-203ENST00000478840 GDI2P50395 445 aaKnown RBP2.88□□□□□ -1.95
UPF3B-203ENST00000478840 LY6EQ16553 131 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 XKRXQ6PP77 449 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 RPRMLQ8N4K4 120 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 C3orf22Q8N5N4 141 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 OR11L1Q8NGX0 322 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 TAMM41Q96BW9 452 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 MBOAT7Q96N66 472 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 B9D2Q9BPU9 175 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 ZNF2Q9BSG1 426 aaPredicted RBP2.88□□□□□ -1.95
UPF3B-203ENST00000478840 SHANK2-AS3Q9BTD1 123 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 METTL9Q9H1A3 318 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 TXNIPQ9H3M7 391 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 VSIRQ9H7M9 311 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 BTRCQ9Y297 605 aa2.88□□□□□ -1.95
UPF3B-203ENST00000478840 DNMT1P26358 1616 aaKnown RBP2.88□□□□□ -1.95
UPF3B-203ENST00000478840 BAZ1BQ9UIG0 1483 aaKnown RBP2.88□□□□□ -1.95
UPF3B-203ENST00000478840 IGKV1OR2-108A0A075B7D4 117 aa2.87□□□□□ -1.95
UPF3B-203ENST00000478840 DAPL1A0PJW8 107 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms