RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 C11orf87Q6NUJ2 197 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 HOGA1Q86XE5 327 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 TMEM123Q8N131 208 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 OR4A4PQ8NGN8 299 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 BCL2L2Q92843 193 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-213ENST00000448038 MRPL13Q9BYD1 178 aaKnown RBP6.39□□□□□ -1.39
SYNE1-213ENST00000448038 CCL28Q9NRJ3 127 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 IL36GQ9NZH8 169 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 FOXD3Q9UJU5 478 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-213ENST00000448038 ICMTO60725 284 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 CECR9P0C854 216 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 ZNF14P17017 642 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-213ENST00000448038 TBR1Q16650 682 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 NRN1LQ496H8 165 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 TCTE3Q8IZS6 198 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 GAPTQ8N292 157 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 C1orf162Q8NEQ5 155 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-213ENST00000448038 TMEM56Q96MV1 263 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 COL25A1Q9BXS0 654 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-213ENST00000448038 PKIBQ9C010 78 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 CACNG5Q9UF02 275 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 J3QW42 95 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 PLA2G10O15496 165 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 ONECUT2O95948 504 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 RPL11P62913 178 aaKnown RBP6.38□□□□□ -1.39
SYNE1-213ENST00000448038 LY6DQ14210 128 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 MOGAT2Q3SYC2 334 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 PPP1R3EQ9H7J1 279 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 SLC35D1Q9NTN3 355 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 OR2W1Q9Y3N9 320 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 CACNA1BQ00975 2339 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 NBASA2RRP1 2371 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 KIF26BQ2KJY2 2108 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 LOC390937A0A1W2PQ73 354 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 ZFP92A6NM28 416 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 MGST3O14880 152 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 CRYZL1O95825 349 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 OR2H2O95918 312 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 H2AFB1P0C5Y9 115 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 PTGDSP41222 190 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 ZNF362Q5T0B9 420 aaPredicted RBP6.38□□□□□ -1.39
SYNE1-213ENST00000448038 FAHD2BQ6P2I3 314 aaPredicted RBP6.38□□□□□ -1.39
SYNE1-213ENST00000448038 OR4S2Q8NH73 311 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 FAHD2AQ96GK7 314 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 HEXA-AS1Q9H8Q6 139 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 LPAR2Q9HBW0 351 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 KCNK7Q9Y2U2 307 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 PCNX2A6NKB5 2137 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 ADAM10O14672 748 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 HLA-DQB1P01920 261 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 FCGR3AP08637 254 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 OR5G3P0C626 314 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 BORCS7Q96B45 105 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 KLHDC3Q9BQ90 382 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 ZNF716A6NP11 495 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 SCAF4O95104 1147 aaKnown RBP6.38□□□□□ -1.39
SYNE1-213ENST00000448038 SNRNP70P08621 437 aaKnown RBP6.38□□□□□ -1.39
SYNE1-213ENST00000448038 ACKR3P25106 362 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 GLRXP35754 106 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 IL34Q6ZMJ4 242 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 BAP18Q8IXM2 172 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 DAZAP1Q96EP5 407 aaKnown RBP6.38□□□□□ -1.39
SYNE1-213ENST00000448038 GSX2Q9BZM3 304 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 SRP14P37108 136 aaKnown RBP6.38□□□□□ -1.39
SYNE1-213ENST00000448038 PSMB3P49720 205 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 THBS3P49746 956 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 AVPI1Q5T686 147 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 CLEC18BQ6UXF7 455 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 ZNF485Q8NCK3 441 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 LILRB4Q8NHJ6 448 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 RBPMSQ93062 196 aaKnown RBP6.38□□□□□ -1.39
SYNE1-213ENST00000448038 SLC2A9Q9NRM0 540 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 PRR13Q9NZ81 148 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 LPAR3Q9UBY5 353 aa6.38□□□□□ -1.39
SYNE1-213ENST00000448038 PUS1Q9Y606 427 aaKnown RBP eCLIP6.38□□□□□ -1.39
SYNE1-213ENST00000448038 KIAA1671Q9BY89 1806 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 SS18L1O75177 396 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-213ENST00000448038 ADAP1O75689 374 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 RAB32Q13637 225 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 SLC25A38Q96DW6 304 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 ZNF629Q9UEG4 869 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-213ENST00000448038 F6UZH7 168 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 SMPD2O60906 423 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 CD40P25942 277 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 CLEC2AQ6UVW9 174 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 CMTM2Q8TAZ6 248 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 ACY3Q96HD9 319 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 IL19Q9UHD0 177 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 SNAPINO95295 136 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 CLDN14O95500 239 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 CYB5R3P00387 301 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-213ENST00000448038 PPP1CCP36873 323 aaKnown RBP6.37□□□□□ -1.39
SYNE1-213ENST00000448038 CEBPDP49716 269 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-213ENST00000448038 ZNF260Q3ZCT1 412 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 TGIF2LYQ8IUE0 185 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 TGIF2LXQ8IUE1 241 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 MUC15Q8N387 334 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 RAB40CQ96S21 281 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 FKBP11Q9NYL4 201 aa6.37□□□□□ -1.39
SYNE1-213ENST00000448038 TIMM8BQ9Y5J9 83 aaPredicted RBP6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms