RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 COL4A1P02462 1669 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 LIPT2A6NK58 231 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 ADRA2AP08913 450 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 FTH1P19P0C7X4 201 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 NPY1RP25929 384 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 EIF4E3Q8N5X7 224 aaKnown RBP10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 CHODLQ9H9P2 273 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 MRPS18BQ9Y676 258 aaKnown RBP10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 MGPP08493 103 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 ID1P41134 155 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 VSTM2AQ8TAG5 236 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 MAP1LC3B2A6NCE7 125 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 MAP1LC3BQ9GZQ8 125 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 FAM60AQ9NP50 221 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 NIT2Q9NQR4 276 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 MMP26Q9NRE1 261 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 DYNLT3P51808 116 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 PPP1R1AQ13522 171 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 NUP37Q8NFH4 326 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 FGF11Q92914 225 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 HRKO00198 91 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 RHBDL1O75783 438 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 FUCA1P04066 466 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 SLC25A30Q5SVS4 291 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 VSTM2LQ96N03 204 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 AP5S1Q9NUS5 200 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 LIFP15018 202 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 RANP62826 216 aaKnown RBP10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 GLDNQ6ZMI3 551 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 A0A1W2PNV4 684 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 CDIPTO14735 213 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 TMEM127O75204 238 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 C1orf53Q5VUE5 145 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 C11orf87Q6NUJ2 197 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 LILRA6Q6PI73 481 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 C19orf35Q6ZS72 473 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 A0A1B0GTH9 108 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 PNLIPP16233 465 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 VAMP3Q15836 100 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 SLC25A40Q8TBP6 338 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 WDR13Q9H1Z4 485 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 GEMIN2O14893 280 aaKnown RBP10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 MED30Q96HR3 178 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 HARBI1Q96MB7 349 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 MANBALQ9NQG1 85 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 J3QR89 54 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 ADAM11O75078 769 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 RASL12Q9NYN1 266 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 FCN1O00602 326 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 TOMM20LQ6UXN7 152 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 ETV3LQ6ZN32 361 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 ADTRPQ96IZ2 230 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 NRTNQ99748 197 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 VPS25Q9BRG1 176 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 LPAR3Q9UBY5 353 aa10.62□□□□□ -0.71
CCDC88A-207ENST00000436346 CBLN3Q6UW01 205 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 SH2D5Q6ZV89 423 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 LURAP1Q96LR2 239 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 SBK3P0C264 359 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 UCN2Q96RP3 112 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 TMEM38BQ9NVV0 291 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 TINAGQ9UJW2 476 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 SPINT1O43278 529 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 HNRNPA3P51991 378 aaKnown RBP10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 BAP18Q8IXM2 172 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 PRSS3P2Q8NHM4 247 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 ZNF596Q8TC21 504 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 ZNF764Q96H86 408 aaPredicted RBP10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 TTTY12Q9BZ98 90 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 ZNF629Q9UEG4 869 aaPredicted RBP10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 TRIM77I1YAP6 450 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 CD96P40200 585 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 TIAL1Q01085 375 aaKnown RBP eCLIP10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 THSD4Q6ZMP0 1018 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 OR8I2Q8N0Y5 310 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 IL22RA2Q969J5 263 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 FLRT3Q9NZU0 649 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 TMEFF2Q9UIK5 374 aaPredicted RBP10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 PIGYQ3MUY2 71 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 SSMEM1Q8WWF3 244 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 NAT2P11245 290 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 SPCS3P61009 180 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 PTP4A1Q93096 173 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 SLC35E4Q6ICL7 350 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 WFDC3Q8IUB2 231 aa10.61□□□□□ -0.71
CCDC88A-207ENST00000436346 A0A1B0GTQ1 180 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 GSTZ1O43708 216 aaPredicted RBP10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 GP1BAP07359 652 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 OR5AL1P0C617 328 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 C1orf185Q5T7R7 199 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 GSX2Q9BZM3 304 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 C9orf170A2RU37 121 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 MRPS11P82912 194 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 OR4D10Q8NGI6 311 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 RNF122Q9H9V4 155 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 REG1BP48304 166 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 GGNBP1Q5YKI7 109 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 MPC1Q9Y5U8 109 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 PEX11BO96011 259 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 AESQ08117 197 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms